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PLM4_65_b1_redo_sep16_scaffold_4964

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_4964_1
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2..562)
DNA (561bp) protein (187aa)
Demethylmenaquinone methyltransferase Tax=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) RepID=UBIE_THET2
ubiE; ubiquinone/menaquinone biosynthesis methyltransferase ubiE
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM4_65_b1_redo_sep16_scaffold_4964_2
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(659..1627)
DNA (969bp) protein (323aa)
Geranylgeranyl pyrophosphate synthase bin=GWD2_Deltaproteobacteria_55_8 species=Methanopyrus kandleri genus=Methanopyrus taxon_order=Methanopyrales taxon_class=Methanopyri phylum=Euryarchaeota tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Geranylgeranyl pyrophosphate synthase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM4_65_b1_redo_sep16_scaffold_4964_3
unknown

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1740..1907
DNA (168bp) protein (56aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_4964_4
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1976..2671
DNA (696bp) protein (232aa)
hypothetical protein SclubSA_04243 bin=GWD2_Deltaproteobacteria_55_8 species=SAR324 cluster bacterium SCGC AAA001-C10 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM4_65_b1_redo_sep16_scaffold_4964_5
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2678..3019)
DNA (342bp) protein (114aa)
Cytochrome C bin=GWD2_Deltaproteobacteria_55_8 species=ACD73 genus=ACD73 taxon_order=ACD73 taxon_class=ACD73 phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
lipoprotein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM4_65_b1_redo_sep16_scaffold_4964_trna_1
unknown

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comp(3275..3358)
DNA (84bp)
transferRNA Leu
PLM4_65_b1_redo_sep16_scaffold_4964_6
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3445..3960
DNA (516bp) protein (172aa)
id=2073412 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM4_65_b1_redo_sep16_scaffold_4964_7
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3965..6718
DNA (2754bp) protein (918aa)
Valine--tRNA ligase Tax=Geobacter metallireducens RepID=Q39X26_GEOMG
valyl-tRNA synthetase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM4_65_b1_redo_sep16_scaffold_4964_8
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6722..7576
DNA (855bp) protein (285aa)
nicotinate-nucleotide pyrophosphorylase (EC:2.4.2.19)
Nicotinate-nucleotide pyrophosphorylase Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9R9H4_AMMDK
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM4_65_b1_redo_sep16_scaffold_4964_9
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7563..8396
DNA (834bp) protein (278aa)
birA; biotin-(acetyl-CoA carboxylase) holoenzyme synthetase and biotin operon repressor; K03524 BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] bin=GWC2_NOV_55_46 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_NOV_55_46 organism_group=Proteobacteria
birA; biotin operon repressor and biotin--acetyl-CoA carboxylase ligase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM4_65_b1_redo_sep16_scaffold_4964_10
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8408..9202
DNA (795bp) protein (265aa)
Type III pantothenate kinase Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MR56_CORCM
coaX; pantothenate kinase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM4_65_b1_redo_sep16_scaffold_4964_11
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9230..11329
DNA (2100bp) protein (700aa)
Translation elongation factor G Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9LZI7_GEODF
fusA; elongation factor G
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM4_65_b1_redo_sep16_scaffold_4964_12
CSP1_5_NC10, NC10, Bacteria

Not on your lists

11411..11566
DNA (156bp) protein (52aa)
hypothetical protein bin=bin3_NC10 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
Tax=CSP1_5_NC10
PLM4_65_b1_redo_sep16_scaffold_4964_13
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11569..12600
DNA (1032bp) protein (344aa)
Amidohydrolase family protein bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
2-amino-3-carboxymuconate-6-semialdehyde decarboxylase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM4_65_b1_redo_sep16_scaffold_4964_14
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12767..13741
DNA (975bp) protein (325aa)
Amidohydrolase family bin=GWD2_Deltaproteobacteria_55_8 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
amidohydrolase 2
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM4_65_b1_redo_sep16_scaffold_4964_15
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13738..14124
DNA (387bp) protein (129aa)
Gamma-glutamyltransferase bin=GWD2_Deltaproteobacteria_55_8 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
gamma-glutamyltranspeptidase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
Displaying 16 items

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