ggKbase home page

PLM4_65_b1_redo_sep16_scaffold_16301

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_16301_1
unknown

Not on your lists

comp(2..685)
-----------------
DNA (684bp)
protein (228aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_16301_2
Thiocystis violascens, Thiocystis, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(744..2183)
-----------------
DNA (1440bp)
protein (480aa)
Diguanylate cyclase (GGDEF) domain-containing protein Tax=Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) RepID=I3Y585_THIV6
diguanylate cyclase
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:AFL72153.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiocystis.;" source="Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) (Chromatium; violascens).;"
PLM4_65_b1_redo_sep16_scaffold_16301_3
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2303..3544
-----------------
DNA (1242bp)
protein (414aa)
Sodium/hydrogen exchanger Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21ZG4_RHOFD
sodium/hydrogen exchanger
Sodium/hydrogen exchanger {ECO:0000313|EMBL:ABD68839.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
PLM4_65_b1_redo_sep16_scaffold_16301_4
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(3569..4228)
-----------------
DNA (660bp)
protein (220aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI0003779B3B
hypothetical protein
Tax=GWC2_Gemmatimonadetes_71_10_curated
PLM4_65_b1_redo_sep16_scaffold_16301_5
RBG_16_Planctomycetes_64_12_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(4367..5446)
-----------------
DNA (1080bp)
protein (360aa)
Uncharacterized protein Tax=Pseudomonas sp. GM30 RepID=J3FGN0_9PSED
saccharopine dehydrogenase family protein
Tax=RBG_16_Planctomycetes_64_12_curated
PLM4_65_b1_redo_sep16_scaffold_16301_6

Not on your lists

comp(5512..6786)
-----------------
DNA (1275bp)
protein (425aa)
aspartate aminotransferase (EC:2.6.1.1)
aspartate aminotransferase Tax=Niabella aurantiaca RepID=UPI000372067A
Aminotransferase class I and II {ECO:0000313|EMBL:AIA15839.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
PLM4_65_b1_redo_sep16_scaffold_16301_7
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6799..7488)
-----------------
DNA (690bp)
protein (230aa)
RNA binding S1 domain protein Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LLG7_HALO1
RNA binding S1 domain-containing protein
RNA binding S1 domain protein {ECO:0000313|EMBL:ACY13184.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae; Haliangium.;" source="Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2).;"
PLM4_65_b1_redo_sep16_scaffold_16301_8
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7485..7973)
-----------------
DNA (489bp)
protein (163aa)
RNA binding S1 domain protein Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LLG7_HALO1
RNA binding S1 domain-containing protein
RNA binding S1 domain protein {ECO:0000313|EMBL:ACY13184.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae; Haliangium.;" source="Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2).;"
PLM4_65_b1_redo_sep16_scaffold_16301_9
BJP_IG2069_Syntrophobacterales_46_30, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8174..9469
-----------------
DNA (1296bp)
protein (432aa)
Tax=BJP_IG2069_Syntrophobacterales_46_30
PLM4_65_b1_redo_sep16_scaffold_16301_10
CG_Delta_07, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9545..10054)
-----------------
DNA (510bp)
protein (170aa)
Nitrate reductase cytochrome c550-type subunit Tax=Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 / ALEN2) RepID=L0DVJ6_THIND
Nitrate reductase cytochrome c550-type subunit
Tax=CG_Delta_07
PLM4_65_b1_redo_sep16_scaffold_16301_11
CG_Delta_07, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10078..10197)
-----------------
DNA (120bp)
protein (40aa)
napA; periplasmic nitrate reductase, large subunit (EC:1.7.99.4)
Nitrate reductase Tax=Campylobacter upsaliensis RM3195 RepID=Q4HRN8_CAMUP
Tax=CG_Delta_07
Displaying 11 items

View Taxonomy