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PLM4_65_b1_redo_sep16_scaffold_2790

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_2790_1
RBG_16_Acidobacteria_64_8_curated, Acidobacteria, Bacteria

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1..204
-----------------
DNA (204bp)
protein (68aa)
30S ribosomal protein S10 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI0003695F9A
30S ribosomal protein S10
Tax=RBG_16_Acidobacteria_64_8_curated
PLM4_65_b1_redo_sep16_scaffold_2790_2
RBG_16_Acidobacteria_64_8_curated, Acidobacteria, Bacteria

Not on your lists


256..885
-----------------
DNA (630bp)
protein (210aa)
50S ribosomal protein L3P; K02906 large subunit ribosomal protein L3 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
50S ribosomal protein L3P
Tax=RBG_16_Acidobacteria_64_8_curated
PLM4_65_b1_redo_sep16_scaffold_2790_3
RBG_16_Acidobacteria_64_8_curated, Acidobacteria, Bacteria

Not on your lists


933..1556
-----------------
DNA (624bp)
protein (208aa)
50S ribosomal protein L4 bin=GWD2_Nitrospirae-related_57_8 species=Eubacterium plexicaudatum genus=Eubacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
50S ribosomal protein L4
Tax=RBG_16_Acidobacteria_64_8_curated
PLM4_65_b1_redo_sep16_scaffold_2790_4
Desulfatibacillum alkenivorans, Desulfatibacillum, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1553..1843
-----------------
DNA (291bp)
protein (97aa)
50S ribosomal protein L23 Tax=Desulfatibacillum alkenivorans (strain AK-01) RepID=RL23_DESAA
rplW; 50S ribosomal protein L23
50S ribosomal protein L23 {ECO:0000255|HAMAP-Rule:MF_01369}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfatibacillum.;" source="Desulfatibacillum alkenivorans (strain AK-01).;"
PLM4_65_b1_redo_sep16_scaffold_2790_5
RBG_16_Acidobacteria_64_8_curated, Acidobacteria, Bacteria

Not on your lists


1862..2689
-----------------
DNA (828bp)
protein (276aa)
50S ribosomal protein L2 Tax=Sorangium cellulosum (strain So ce56) RepID=RL2_SORC5
rplB; 50S ribosomal protein L2
Tax=RBG_16_Acidobacteria_64_8_curated
PLM4_65_b1_redo_sep16_scaffold_2790_6
RBG_16_Acidobacteria_64_8_curated, Acidobacteria, Bacteria

Not on your lists


2705..3004
-----------------
DNA (300bp)
protein (100aa)
Ribosomal protein S19/S15 bin=GWC2_Nitrospirae_57_13 species=Candidatus Poribacteria sp. WGA-A3 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
rpsS; 30S ribosomal protein S19
Tax=RBG_16_Acidobacteria_64_8_curated
PLM4_65_b1_redo_sep16_scaffold_2790_7
RBG_16_Acidobacteria_64_8_curated, Acidobacteria, Bacteria

Not on your lists


3018..3467
-----------------
DNA (450bp)
protein (150aa)
50S ribosomal protein L22 bin=GWA2_Ignavibacteriae_54_16_partial species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Ignavibacteriae_54_16_partial organism_group=Ignavibacteria
50S ribosomal protein L22
Tax=RBG_16_Acidobacteria_64_8_curated
PLM4_65_b1_redo_sep16_scaffold_2790_8
RBG_16_Acidobacteria_64_8_curated, Acidobacteria, Bacteria

Not on your lists


3470..4120
-----------------
DNA (651bp)
protein (217aa)
30S ribosomal protein S3; K02982 small subunit ribosomal protein S3 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
30S ribosomal protein S3
Tax=RBG_16_Acidobacteria_64_8_curated
PLM4_65_b1_redo_sep16_scaffold_2790_9
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists


4136..4555
-----------------
DNA (420bp)
protein (140aa)
50S ribosomal protein L16 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKH5_9BACT
rplP; 50S ribosomal protein L16
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_2790_10
RBG_16_Acidobacteria_64_8_curated, Acidobacteria, Bacteria

Not on your lists


4583..4777
-----------------
DNA (195bp)
protein (65aa)
50S ribosomal protein L29 Tax=Thermodesulfatator atlanticus RepID=UPI0003B70B3E
50S ribosomal protein L29
Tax=RBG_16_Acidobacteria_64_8_curated
PLM4_65_b1_redo_sep16_scaffold_2790_11
RBG_16_Acidobacteria_64_8_curated, Acidobacteria, Bacteria

Not on your lists


4780..5073
-----------------
DNA (294bp)
protein (98aa)
30S ribosomal protein S17 Tax=Desulfococcus multivorans DSM 2059 RepID=S7T9E5_DESML
30S ribosomal protein S17
Tax=RBG_16_Acidobacteria_64_8_curated
PLM4_65_b1_redo_sep16_scaffold_2790_12
RBG_16_Acidobacteria_64_8_curated, Acidobacteria, Bacteria

Not on your lists


5070..5435
-----------------
DNA (366bp)
protein (122aa)
50S ribosomal protein L14 Tax=Koribacter versatilis (strain Ellin345) RepID=RL14_KORVE
rplN; 50S ribosomal protein L14
Tax=RBG_16_Acidobacteria_64_8_curated
PLM4_65_b1_redo_sep16_scaffold_2790_13
RBG_16_Acidobacteria_64_8_curated, Acidobacteria, Bacteria

Not on your lists


5462..5785
-----------------
DNA (324bp)
protein (108aa)
50S ribosomal protein L24 Tax=Megasphaera sp. UPII 135-E RepID=F9MNH5_9FIRM
rplX; 50S ribosomal protein L24
Tax=RBG_16_Acidobacteria_64_8_curated
PLM4_65_b1_redo_sep16_scaffold_2790_14
RBG_16_Acidobacteria_64_8_curated, Acidobacteria, Bacteria

Not on your lists


5799..6470
-----------------
DNA (672bp)
protein (224aa)
50S ribosomal protein L5 Tax=Holophaga foetida DSM 6591 RepID=H1P566_9BACT
50S ribosomal protein L5
Tax=RBG_16_Acidobacteria_64_8_curated
PLM4_65_b1_redo_sep16_scaffold_2790_15
RBG_16_Acidobacteria_64_8_curated, Acidobacteria, Bacteria

Not on your lists


6482..6670
-----------------
DNA (189bp)
protein (63aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI0003822EB2
30S ribosomal protein S14
Tax=RBG_16_Acidobacteria_64_8_curated
PLM4_65_b1_redo_sep16_scaffold_2790_16
RBG_16_Acidobacteria_64_8_curated, Acidobacteria, Bacteria

Not on your lists


6681..7079
-----------------
DNA (399bp)
protein (133aa)
30S ribosomal protein S8 Tax=Halanaerobium saccharolyticum subsp. saccharolyticum DSM 6643 RepID=M5DX70_9FIRM
30S ribosomal protein S8
Tax=RBG_16_Acidobacteria_64_8_curated
PLM4_65_b1_redo_sep16_scaffold_2790_17
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists


7096..7635
-----------------
DNA (540bp)
protein (180aa)
50S ribosomal protein L6 Tax=Phascolarctobacterium sp. CAG:207 RepID=R6J9T6_9FIRM
rplF; 50S ribosomal protein L6
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM4_65_b1_redo_sep16_scaffold_2790_18
Halothermothrix orenii, Halothermothrix, Halanaerobiales, Clostridia, Firmicutes, Bacteria

Not on your lists


7665..8051
-----------------
DNA (387bp)
protein (129aa)
50S ribosomal protein L18 Tax=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) RepID=B8D0E0_HALOH
50S ribosomal protein L18
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; species="Bacteria; Firmicutes; Clostridia; Halanaerobiales; Halanaerobiaceae; Halothermothrix.;" source="Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562).;"
PLM4_65_b1_redo_sep16_scaffold_2790_19
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists


8084..8581
-----------------
DNA (498bp)
protein (166aa)
30S ribosomal protein S5 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JXY8_DESAC
30S ribosomal protein S5
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_2790_20
RIFOXYD2_FULL_Sideroxydans_59_7_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8661..8852
-----------------
DNA (192bp)
protein (64aa)
50S ribosomal protein L30 Tax=Ideonella sp. B508-1 RepID=UPI000344DF45
rpmD; 50S ribosomal protein L30
Tax=RIFOXYD2_FULL_Sideroxydans_59_7_curated
PLM4_65_b1_redo_sep16_scaffold_2790_21
RBG_16_Acidobacteria_64_8_curated, Acidobacteria, Bacteria

Not on your lists


8849..9286
-----------------
DNA (438bp)
protein (146aa)
50S ribosomal protein L15 Tax=Candidatus Nitrospira defluvii RepID=D8PCX1_9BACT
rplO; 50S ribosomal protein L15
Tax=RBG_16_Acidobacteria_64_8_curated
PLM4_65_b1_redo_sep16_scaffold_2790_22
RBG_16_Acidobacteria_64_8_curated, Acidobacteria, Bacteria

Not on your lists


9283..10665
-----------------
DNA (1383bp)
protein (461aa)
hypothetical protein Tax=Aminicenantes RepID=UPI000361AA1F
protein translocase subunit secY/sec61 alpha
Tax=RBG_16_Acidobacteria_64_8_curated
PLM4_65_b1_redo_sep16_scaffold_2790_23
RBG_16_Acidobacteria_64_8_curated, Acidobacteria, Bacteria

Not on your lists

10658..11269
-----------------
DNA (612bp)
protein (204aa)
adk; adenylate kinase (EC:2.7.4.3)
adenylate kinase Tax=Serinicoccus marinus RepID=UPI0003B5F1D9
Tax=RBG_16_Acidobacteria_64_8_curated
PLM4_65_b1_redo_sep16_scaffold_2790_24
RBG_16_Acidobacteria_64_8_curated, Acidobacteria, Bacteria

Not on your lists

11272..12021
-----------------
DNA (750bp)
protein (250aa)
methionine aminopeptidase (EC:3.4.11.18)
Methionine aminopeptidase Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6Q1L6_9FIRM
Tax=RBG_16_Acidobacteria_64_8_curated
PLM4_65_b1_redo_sep16_scaffold_2790_25
RBG_16_Acidobacteria_64_8_curated, Acidobacteria, Bacteria

Not on your lists

12058..12276
-----------------
DNA (219bp)
protein (73aa)
Translation initiation factor IF-1 Tax=Koribacter versatilis (strain Ellin345) RepID=IF1_KORVE
infA; translation initiation factor IF-1
Tax=RBG_16_Acidobacteria_64_8_curated
PLM4_65_b1_redo_sep16_scaffold_2790_26
RBG_16_Acidobacteria_64_8_curated, Acidobacteria, Bacteria

Not on your lists


12424..12807
-----------------
DNA (384bp)
protein (128aa)
30S ribosomal protein S13 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=RS13_ACIC5
rpsM; 30S ribosomal protein S13
Tax=RBG_16_Acidobacteria_64_8_curated
PLM4_65_b1_redo_sep16_scaffold_2790_27
RBG_16_Acidobacteria_64_8_curated, Acidobacteria, Bacteria

Not on your lists


12820..13236
-----------------
DNA (417bp)
protein (139aa)
30S ribosomal protein S11 Tax=Koribacter versatilis (strain Ellin345) RepID=RS11_KORVE
30S ribosomal protein S11
Tax=RBG_16_Acidobacteria_64_8_curated
PLM4_65_b1_redo_sep16_scaffold_2790_28
RBG_16_Acidobacteria_64_8_curated, Acidobacteria, Bacteria

Not on your lists


13371..14000
-----------------
DNA (630bp)
protein (210aa)
30S ribosomal protein S4 Tax=Desulfosporosinus youngiae DSM 17734 RepID=H5XRV3_9FIRM
rpsD; 30S ribosomal protein S4
Tax=RBG_16_Acidobacteria_64_8_curated
PLM4_65_b1_redo_sep16_scaffold_2790_29
RBG_16_Acidobacteria_64_8_curated, Acidobacteria, Bacteria

Not on your lists

14033..15037
-----------------
DNA (1005bp)
protein (335aa)
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6) bin=CNBR_ACIDO species=Terriglobus roseus genus=Terriglobus taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
DNA-directed RNA polymerase subunit alpha
Tax=RBG_16_Acidobacteria_64_8_curated
PLM4_65_b1_redo_sep16_scaffold_2790_30
RBG_16_Acidobacteria_64_8_curated, Acidobacteria, Bacteria

Not on your lists


15050..15676
-----------------
DNA (627bp)
protein (209aa)
50S ribosomal protein L17 Tax=Nitrospina gracilis 3/211 RepID=M1ZAM5_9BACT
rplQ; 50S ribosomal protein L17
Tax=RBG_16_Acidobacteria_64_8_curated
Displaying items 1-30 of 33 in total

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