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PLM4_65_b1_redo_sep16_scaffold_15445

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_15445_1
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(2..640)
DNA (639bp) protein (213aa)
o-succinylbenzoate synthase {ECO:0000256|HAMAP-Rule:MF_01933}; Short=OSB synthase {ECO:0000256|HAMAP-Rule:MF_01933};; Short=OSBS {ECO:0000256|HAMAP-Rule:MF_01933};; EC=4.2.1.113 {ECO:0000256|HAMAP-Rule:MF_01933};; 4-(2'-carboxyphenyl)-4-oxybutyric acid synthase {ECO:0000256|HAMAP-Rule:MF_01933}; o-succinylbenzoic acid synthase {ECO:0000256|HAMAP-Rule:MF_01933}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
O-succinylbenzoate synthase (EC:4.2.1.-)
O-succinylbenzoate synthase Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IPL2_KORVE
PLM4_65_b1_redo_sep16_scaffold_15445_2
unknown

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684..1208
DNA (525bp) protein (175aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_15445_3
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(1339..2661)
DNA (1323bp) protein (441aa)
Cysteine desulfurase {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216}; EC=2.8.1.7 {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Cysteine desulfurase Tax=Betaproteobacteria bacterium MOLA814 RepID=V4YPD0_9PROT
SufS subfamily cysteine desulfurase
PLM4_65_b1_redo_sep16_scaffold_15445_4
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(2618..3955)
DNA (1338bp) protein (446aa)
FeS assembly protein SufD {ECO:0000313|EMBL:CDM64968.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
SufD, needed for fhuF Fe-S center production/stability bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
iron ABC transporter permease
PLM4_65_b1_redo_sep16_scaffold_15445_5

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comp(3961..4740)
DNA (780bp) protein (260aa)
FeS assembly ATPase SufC Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LLD6_CHLTF
FeS assembly ATPase SufC {ECO:0000313|EMBL:AIA17997.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
FeS assembly ATPase SufC
PLM4_65_b1_redo_sep16_scaffold_15445_6
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(4840..6276)
DNA (1437bp) protein (479aa)
Iron-regulated ABC transporter membrane component SufB Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LLD5_CHLTF
Iron-regulated ABC transporter membrane component SufB {ECO:0000313|EMBL:CDM64966.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Iron-regulated ABC transporter membrane component SufB
PLM4_65_b1_redo_sep16_scaffold_15445_7
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(6315..6731)
DNA (417bp) protein (139aa)
Rrf2 family protein (Putative transcriptional regulator) Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LLD4_CHLTF
Transcriptional regulator, BadM/Rrf2 family {ECO:0000313|EMBL:CDM64965.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
putative transcriptional regulator
PLM4_65_b1_redo_sep16_scaffold_15445_8
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

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comp(7052..7738)
DNA (687bp) protein (229aa)
TonB family C-terminal domain protein Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LGE2_CHLTF
TonB family C-terminal domain-containing protein
TonB family C-terminal domain protein {ECO:0000313|EMBL:AEP10902.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum (strain B).;"
PLM4_65_b1_redo_sep16_scaffold_15445_9
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(7774..8244)
DNA (471bp) protein (157aa)
TonB family protein {ECO:0000313|EMBL:CDM65509.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
PLM4_65_b1_redo_sep16_scaffold_15445_10
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(8633..9784)
DNA (1152bp) protein (384aa)
5-methylthioadenosine/S-adenosylhomocysteine deaminase {ECO:0000256|HAMAP-Rule:MF_01281}; Short=MTA/SAH deaminase {ECO:0000256|HAMAP-Rule:MF_01281};; EC=3.5.4.28 {ECO:0000256|HAMAP-Rule:MF_01281};; EC=3.5.4.31 {ECO:0000256|HAMAP-Rule:MF_01281};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
5-methylthioadenosine/S-adenosylhomocysteine deaminase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LJH0_CHLTF
cytosine deaminase
PLM4_65_b1_redo_sep16_scaffold_15445_11
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(10000..10446)
DNA (447bp) protein (149aa)
Cytidine deaminase {ECO:0000313|EMBL:CDM65507.1}; EC=3.5.4.5 {ECO:0000313|EMBL:CDM65507.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
cytidine deaminase (EC:3.5.4.5)
Cytidine deaminase Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01VX8_SOLUE
PLM4_65_b1_redo_sep16_scaffold_15445_12
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(10443..10859)
DNA (417bp) protein (139aa)
Uridine kinase {ECO:0000256|HAMAP-Rule:MF_00551, ECO:0000256|RuleBase:RU003825}; EC=2.7.1.48 {ECO:0000256|HAMAP-Rule:MF_00551, ECO:0000256|RuleBase:RU003825};; Cytidine monophosphokinase {ECO:0000256|HAMAP-Rule:MF_00551}; Uridine monophosphokinase {ECO:0000256|HAMAP-Rule:MF_00551}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
uridine kinase (EC:2.7.1.48)
Uridine kinase Tax=Clostridium sporogenes ATCC 15579 RepID=J7T8U0_CLOSG
Displaying 12 items

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