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PLM4_65_b1_redo_sep16_scaffold_1642

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_1642_1
Corallococcus coralloides, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(190..1728)
DNA (1539bp) protein (513aa)
Uncharacterized protein Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MWI9_CORCM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFE03334.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus.;" source="Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086; / M2) (Myxococcus coralloides).;"
PLM4_65_b1_redo_sep16_scaffold_1642_2
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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1948..3609
DNA (1662bp) protein (554aa)
Putative hydrolase of the metallo-beta-lactamase superfamily Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LI27_CHLTF
Predicted hydrolase of the metallo-beta-lactamase superfamily {ECO:0000313|EMBL:CDM66185.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
putative metallo-beta-lactamase superfamily hydrolase
PLM4_65_b1_redo_sep16_scaffold_1642_3
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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3706..4476
DNA (771bp) protein (257aa)
oxidoreductase, short chain dehydrogenase/reductase family protein Tax=Gemmata obscuriglobus RepID=UPI00016C474A
Uncharacterized protein {ECO:0000313|EMBL:CDM66186.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
short chain dehydrogenase/reductase family oxidoreductase
PLM4_65_b1_redo_sep16_scaffold_1642_4
Nocardia farcinica, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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4612..5586
DNA (975bp) protein (325aa)
uppP; undecaprenyl pyrophosphate phosphatase (EC:3.6.1.27)
Undecaprenyl-diphosphatase {ECO:0000255|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000255|HAMAP-Rule:MF_01006};; Bacitracin resistance protein {ECO:0000255|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphate phosphatase {ECO:0000255|HAMAP-Rule:MF_01006}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia farcinica (strain IFM 10152).;"
Undecaprenyl-diphosphatase Tax=Nocardia farcinica (strain IFM 10152) RepID=UPPP_NOCFA
PLM4_65_b1_redo_sep16_scaffold_1642_5
unknown

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5818..6144
DNA (327bp) protein (109aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1642_6
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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6181..7947
DNA (1767bp) protein (589aa)
Exonuclease RecJ {ECO:0000313|EMBL:CDM66188.1}; EC=3.1.-.- {ECO:0000313|EMBL:CDM66188.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
recJ; single-stranded-DNA-specific exonuclease RecJ (EC:3.1.-.-)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00038284A3
PLM4_65_b1_redo_sep16_scaffold_1642_7
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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8053..10368
DNA (2316bp) protein (772aa)
Uncharacterized protein conserved in bacteria Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LIS1_CHLTF
Uncharacterized protein {ECO:0000313|EMBL:CDM66189.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_1642_8
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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10543..11367
DNA (825bp) protein (275aa)
ABC-type (Unclassified) transport system, ATPase component {ECO:0000313|EMBL:CDM66190.1}; EC=3.6.3.- {ECO:0000313|EMBL:CDM66190.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
ABC transporter ATPase (EC:3.6.3.-)
ABC-type (Unclassified) transport system, ATPase component Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LG26_CHLTF
PLM4_65_b1_redo_sep16_scaffold_1642_9
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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11485..13104
DNA (1620bp) protein (540aa)
RNA polymerase sigma-54 factor Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LG25_CHLTF
RNA polymerase, sigma 54 subunit, RpoN/SigL {ECO:0000313|EMBL:CDM66191.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
RNA polymerase sigma-54 factor
PLM4_65_b1_redo_sep16_scaffold_1642_10
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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13277..13810
DNA (534bp) protein (178aa)
Ribosomal subunit interface protein Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LLF6_CHLTF
Ribosomal subunit interface protein {ECO:0000313|EMBL:CDM66192.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
ribosomal subunit interface protein
PLM4_65_b1_redo_sep16_scaffold_1642_11
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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13960..14880
DNA (921bp) protein (307aa)
Nucleotide-binding protein PYK22_02206 {ECO:0000256|HAMAP-Rule:MF_00636}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
putative P-loop-containing kinase
UPF0042 nucleotide-binding protein yhbJ bin=GWC2_Nitrospirae-rel_56_14 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
PLM4_65_b1_redo_sep16_scaffold_1642_12
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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15021..15482
DNA (462bp) protein (154aa)
Phosphotransferase system, mannose/fructose-specific component IIA {ECO:0000313|EMBL:CDM66195.1}; EC=2.7.1.69 {ECO:0000313|EMBL:CDM66195.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
PTS system transporter subunit IIA (EC:2.7.1.69)
PTS system IIA component Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LGJ3_CHLTF
PLM4_65_b1_redo_sep16_scaffold_1642_13
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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15482..15772
DNA (291bp) protein (97aa)
Phosphocarrier protein HPr (Histidine-containing protein) Tax=Cellvibrio japonicus (strain Ueda107) RepID=B3PBZ9_CELJU
Phosphotransferase system HPr (HPr) family protein {ECO:0000313|EMBL:CDM66196.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
phosphotransferase system HPr family protein
PLM4_65_b1_redo_sep16_scaffold_1642_14
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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15769..17559
DNA (1791bp) protein (597aa)
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000256|PIRNR:PIRNR000732}; EC=2.7.3.9 {ECO:0000256|PIRNR:PIRNR000732};; Phosphotransferase system, enzyme I {ECO:0000256|PIRNR:PIRNR000732}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Phosphoenolpyruvate-protein phosphotransferase Tax=Caldalkalibacillus thermarum TA2.A1 RepID=F5L5L8_9BACI
phosphoenolpyruvate-protein phosphotransferase
PLM4_65_b1_redo_sep16_scaffold_1642_15
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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17744..18757
DNA (1014bp) protein (338aa)
Periplasmic protein involved in polysaccharide export {ECO:0000313|EMBL:CDM66198.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
PLM4_65_b1_redo_sep16_scaffold_1642_16
Candidatus Accumulibacter sp. SK-02, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

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comp(18840..19157)
DNA (318bp) protein (106aa)
Uncharacterized protein {ECO:0000313|EMBL:KFB74826.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-02.;"
PLM4_65_b1_redo_sep16_scaffold_1642_17
Desulfobacca acetoxidans, Desulfobacca, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(19100..19828)
DNA (729bp) protein (243aa)
Sporulation domain-containing protein Tax=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) RepID=F2NC06_DESAR
sporulation domain-containing protein
Sporulation domain-containing protein {ECO:0000313|EMBL:AEB08083.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Desulfobacca.;" source="Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2).;"
PLM4_65_b1_redo_sep16_scaffold_1642_18
unknown

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comp(20235..20702)
DNA (468bp) protein (156aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1642_19
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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21055..21312
DNA (258bp) protein (86aa)
Uncharacterized protein {ECO:0000313|EMBL:CDM66884.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein bin=BACIGN_2 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=BACIGN_2 organism_group=Unknown_CP
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_1642_20
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

21296..21781
DNA (486bp) protein (162aa)
Uncharacterized protein {ECO:0000313|EMBL:CDM66199.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
PLM4_65_b1_redo_sep16_scaffold_1642_21
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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21786..22463
DNA (678bp) protein (226aa)
hypothetical protein Tax=Dyella ginsengisoli RepID=UPI00034A496B
Uncharacterized protein {ECO:0000313|EMBL:CDM66200.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_1642_22
unknown

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comp(22447..22953)
DNA (507bp) protein (169aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1642_23
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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23291..23572
DNA (282bp) protein (94aa)
Uncharacterized protein {ECO:0000313|EMBL:CDM66201.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
PLM4_65_b1_redo_sep16_scaffold_1642_24
Herpetosiphon aurantiacus, Herpetosiphon, Herpetosiphonales, Chloroflexia, Chloroflexi, Bacteria

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comp(23991..24620)
DNA (630bp) protein (210aa)
Major facilitator superfamily MFS_1 Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9AY02_HERA2
major facilitator superfamily transporter
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABX04968.1}; species="Bacteria; Chloroflexi; Chloroflexia; Herpetosiphonales; Herpetosiphonaceae; Herpetosiphon.;" source="Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785).;"
Displaying 24 items

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