ggKbase home page

PLM4_65_b1_redo_sep16_scaffold_2276

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_2276_1
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

Not on your lists

comp(2..967)
DNA (966bp) protein (322aa)
TonB-dependent Receptor Plug Domain protein Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LJT3_CHLTF
TonB-dependent Receptor Plug domain-containing protein
TonB-dependent Receptor Plug Domain protein {ECO:0000313|EMBL:AEP13100.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum (strain B).;"
PLM4_65_b1_redo_sep16_scaffold_2276_2
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(1179..1445)
DNA (267bp) protein (89aa)
Putative uncharacterized protein Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LF61_CHLTF
Uncharacterized protein {ECO:0000313|EMBL:CDM66532.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_2276_3
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(1582..2949)
DNA (1368bp) protein (456aa)
Subtilisin-like serine protease Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LGH6_CHLTF
Subtilisin-like serine protease {ECO:0000313|EMBL:CDM66533.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
subtilisin-like serine protease
PLM4_65_b1_redo_sep16_scaffold_2276_4
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

3207..3656
DNA (450bp) protein (150aa)
Putative uncharacterized protein Tax=uncultured organism MedDCM-OCT-S04-C138 RepID=D6PJW1_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CDM66534.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
PLM4_65_b1_redo_sep16_scaffold_2276_5
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

3649..4050
DNA (402bp) protein (134aa)
TonB family protein Tax=Acidobacterium sp. (strain MP5ACTX9) RepID=E8WVA1_ACISM
TonB family protein {ECO:0000313|EMBL:CDM65243.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
TonB family protein
PLM4_65_b1_redo_sep16_scaffold_2276_6
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

4065..4745
DNA (681bp) protein (227aa)
Oxidoreductase molybdopterin binding protein Tax=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) RepID=D2R3H1_PIRSD
Sulfite oxidase-like oxidoreductase {ECO:0000313|EMBL:CDM66535.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
oxidoreductase molybdopterin binding protein
PLM4_65_b1_redo_sep16_scaffold_2276_7
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

4932..6455
DNA (1524bp) protein (508aa)
Zn-dependent hydrolase-like glyoxylase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LJE0_CHLTF
Zn-dependent hydrolase, glyoxylase {ECO:0000313|EMBL:CDM66567.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Zn-dependent hydrolase-like glyoxylase
PLM4_65_b1_redo_sep16_scaffold_2276_8
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

6539..8047
DNA (1509bp) protein (503aa)
Mg-chelatase subunit ChlI {ECO:0000313|EMBL:CDM66566.1}; EC=6.6.1.1 {ECO:0000313|EMBL:CDM66566.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Magnesium chelatase subunit ChlI Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5X5_GEMAT
chlI; magnesium chelatase subunit ChlI
PLM4_65_b1_redo_sep16_scaffold_2276_9

Not on your lists

8054..8314
DNA (261bp) protein (87aa)
Uncharacterized protein Tax=uncultured bacterium RepID=K2AGN9_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKD67145.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
PLM4_65_b1_redo_sep16_scaffold_2276_10
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

8378..9736
DNA (1359bp) protein (453aa)
Putative uncharacterized protein Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LIH3_CHLTF
Uncharacterized protein with a von Willebrand factor type A (VWA) domain {ECO:0000313|EMBL:CDM66565.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_2276_11
Microcoleus sp. PCC 7113, Microcoleus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

9850..12249
DNA (2400bp) protein (800aa)
PAS domain S-box Tax=Microcoleus sp. PCC 7113 RepID=K9WLC4_9CYAN
PAS domain-containing protein
PAS domain S-box {ECO:0000313|EMBL:AFZ20559.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleus.;" source="Microcoleus sp. PCC 7113.;"
PLM4_65_b1_redo_sep16_scaffold_2276_12
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

12437..12868
DNA (432bp) protein (144aa)
Predicted thioesterase {ECO:0000313|EMBL:CDM64530.1}; EC=3.1.2.- {ECO:0000313|EMBL:CDM64530.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Putative Pol-Pal system-associated acyl-CoA thioesterase Tax=mine drainage metagenome RepID=E6PEA1_9ZZZZ
4-hydroxybenzoyl-CoA thioesterase
PLM4_65_b1_redo_sep16_scaffold_2276_13
Rivularia sp. PCC 7116, Rivularia, Nostocales, Cyanobacteria, Bacteria

Not on your lists

13184..13816
DNA (633bp) protein (211aa)
pyridoxamine 5'-phosphate oxidase (EC:1.4.3.5)
Pyridoxine/pyridoxamine 5'-phosphate oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; EC=1.4.3.5 {ECO:0000256|HAMAP-Rule:MF_01629};; PNP/PMP oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; Pyridoxal 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_01629}; species="Bacteria; Cyanobacteria; Nostocales; Rivulariaceae; Rivularia.;" source="Rivularia sp. PCC 7116.;"
Pyridoxine/pyridoxamine 5'-phosphate oxidase Tax=Rivularia sp. PCC 7116 RepID=K9R7J1_9CYAN
PLM4_65_b1_redo_sep16_scaffold_2276_14
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(14086..15315)
DNA (1230bp) protein (410aa)
Dehydrogenases (Flavoproteins) Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LE48_CHLTF
Geranylgeranyl reductase family protein {ECO:0000313|EMBL:CDM66778.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
dehydrogenase
PLM4_65_b1_redo_sep16_scaffold_2276_15
MPJ_Desulfotomaculum_kuznetsovii_45_62_partial, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15519..16913
DNA (1395bp) protein (465aa)
Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Q2RG57_MOOTA
hypothetical protein
Tax=MPJ_Desulfotomaculum_kuznetsovii_45_62_partial
PLM4_65_b1_redo_sep16_scaffold_2276_16
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(16969..19428)
DNA (2460bp) protein (820aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B (Fragment) Tax=uncultured Acidobacteria bacterium RepID=H5SFX5_9BACT
PLM4_65_b1_redo_sep16_scaffold_2276_17
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(19496..20650)
DNA (1155bp) protein (385aa)
DNA replication and repair protein RecF Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LH00_CHLTF
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
recF protein
PLM4_65_b1_redo_sep16_scaffold_2276_18
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(20776..21054)
DNA (279bp) protein (93aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
DNA polymerase III subunit beta (EC:2.7.7.7)
hypothetical protein Tax=unclassified Aminicenantes RepID=UPI0003B38D4D
Displaying 18 items

View Taxonomy