ggKbase home page

PLM4_65_b1_redo_sep16_scaffold_3195

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_3195_1
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(1..1161)
DNA (1161bp) protein (387aa)
Gamma-glutamyltransferase {ECO:0000313|EMBL:CDM66936.1}; EC=2.3.2.2 {ECO:0000313|EMBL:CDM66936.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Gamma-glutamyltranspeptidase Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q090F1_STIAD
gamma-glutamyltranspeptidase
PLM4_65_b1_redo_sep16_scaffold_3195_2
RBG_16_Planctomycetes_64_12_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

1346..3598
DNA (2253bp) protein (751aa)
arylsulfatase Tax=Verrucomicrobium spinosum RepID=UPI00017443C5
sulfatase
Tax=RBG_16_Planctomycetes_64_12_curated
PLM4_65_b1_redo_sep16_scaffold_3195_3
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(3600..5378)
DNA (1779bp) protein (593aa)
Uncharacterized protein Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MEU9_RHOM4
hypothetical protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3195_4
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(5440..6198)
DNA (759bp) protein (253aa)
D-alanyl-D-alanine dipeptidase {ECO:0000256|HAMAP-Rule:MF_01924}; Short=D-Ala-D-Ala dipeptidase {ECO:0000256|HAMAP-Rule:MF_01924};; EC=3.4.13.22 {ECO:0000256|HAMAP-Rule:MF_01924};; Flags: Precursor;; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
Peptidase M15D, vanX D-ala-D-ala dipeptidase Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01PG0_SOLUE
peptidase M15D, vanX D-ala-D-ala dipeptidase
PLM4_65_b1_redo_sep16_scaffold_3195_5
Truepera radiovictrix, Truepera, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

6231..7352
DNA (1122bp) protein (374aa)
Peptidase M20 Tax=Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 / RQ-24) RepID=D7CUZ4_TRURR
peptidase M20
Peptidase M20 {ECO:0000313|EMBL:ADI15821.1}; species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Trueperaceae; Truepera.;" source="Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 /; RQ-24).;"
PLM4_65_b1_redo_sep16_scaffold_3195_6
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(7465..8358)
DNA (894bp) protein (298aa)
Heat shock protein bin=GWA2_Elusimicrobia_66_18 species=Leptonema illini genus=Leptonema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
htpX; Zn-dependent protease
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_65_b1_redo_sep16_scaffold_3195_7
R_Rhodocyclales_63_24, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8460..9245)
DNA (786bp) protein (262aa)
Acyl-(Acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase Tax=Nitrosococcus watsoni (strain C-113) RepID=D8K5V5_NITWC
UDP-N-acetylglucosamine acyltransferase
Tax=RIFCSPLOWO2_02_FULL_Rhodocyclales_63_24_curated
PLM4_65_b1_redo_sep16_scaffold_3195_8
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(9314..9925)
DNA (612bp) protein (204aa)
hypothetical protein bin=CNBR_ACIDO species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
protein yceI precursor
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM4_65_b1_redo_sep16_scaffold_3195_9
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(9940..10455)
DNA (516bp) protein (172aa)
MarR family transcriptional regulator bin=BACIGN_2 species=Rhodopirellula maiorica genus=Rhodopirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=BACIGN_2 organism_group=Unknown_CP
MarR family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
PLM4_65_b1_redo_sep16_scaffold_3195_10
Aeromonas diversa, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10562..11911)
DNA (1350bp) protein (450aa)
hypothetical protein Tax=Desulfovibrio desulfuricans RepID=UPI00036B9071
sn-glycerol-3-phosphate transporter {ECO:0000313|EMBL:ENY70728.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas diversa 2478-85.;"
glpT; sn-glycerol-3-phosphate transporter
PLM4_65_b1_redo_sep16_scaffold_3195_11
Desulfatitalea sp. BRH_c12, Desulfatitalea, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11933..13495
DNA (1563bp) protein (521aa)
Glycerol-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361217}; EC=1.1.5.3 {ECO:0000256|RuleBase:RU361217};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfatitalea.;" source="Desulfatitalea sp. BRH_c12.;"
glycerol-3-phosphate dehydrogenase (EC:1.1.5.3)
FAD-dependent oxidoreductase Tax=Schlesneria paludicola RepID=UPI00029A88A3
PLM4_65_b1_redo_sep16_scaffold_3195_12
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

Not on your lists

comp(13522..14622)
DNA (1101bp) protein (367aa)
Alanine racemase, N-terminal domain family protein bin=GWC2_Chloroflexi_73_18 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
alanine racemase domain-containing protein
Tax=GWC2_RIF_CHLX_73_18_curated
PLM4_65_b1_redo_sep16_scaffold_3195_13
Geobacter lovleyi, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14938..16089
DNA (1152bp) protein (384aa)
hydrogenase (NiFe) small subunit HydA (EC:1.12.99.6)
Hydrogenase (NiFe) small subunit HydA {ECO:0000313|EMBL:ACD95772.1}; EC=1.12.99.6 {ECO:0000313|EMBL:ACD95772.1};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ).;"
Hydrogenase (NiFe) small subunit HydA Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E3F3_GEOLS
PLM4_65_b1_redo_sep16_scaffold_3195_14
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

16086..17714
DNA (1629bp) protein (543aa)
Nickel-dependent hydrogenase, large subunit Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GBG1_GEOUR
nickel-dependent hydrogenase, large subunit
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
Displaying 14 items

View Taxonomy