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PLM4_65_b1_redo_sep16_scaffold_4444

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_4444_1
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

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comp(2..556)
DNA (555bp) protein (185aa)
Cytochrome c-type biogenesis protein CcsB bin=GWA2_OP3_52_12 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
cytochrome c assembly protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
PLM4_65_b1_redo_sep16_scaffold_4444_2
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

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comp(645..1220)
DNA (576bp) protein (192aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM4_65_b1_redo_sep16_scaffold_4444_3
R_Acidobacteria_65_29, Acidobacteria, Bacteria

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comp(1298..1615)
DNA (318bp) protein (106aa)
competence protein ComEA helix-hairpin-helix repeat protein; K02237 competence protein ComEA bin=RBG_16_Aminicenantes_66_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_66_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
competence protein ComEA
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM4_65_b1_redo_sep16_scaffold_4444_4
RBG_13_Aminicenantes_63_10_curated, Aminicenantes, Bacteria

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comp(1990..2454)
DNA (465bp) protein (155aa)
Tax=RBG_13_Aminicenantes_63_10_curated
PLM4_65_b1_redo_sep16_scaffold_4444_5
RBG_13_RIF03_48_7_curated, RIF3, Bacteria

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comp(2484..2816)
DNA (333bp) protein (111aa)
Putative uncharacterized protein Tax=Myxococcus xanthus (strain DK 1622) RepID=Q1DCA5_MYXXD
hypothetical protein
Tax=RBG_13_RIF03_48_7_curated
PLM4_65_b1_redo_sep16_scaffold_4444_6
Penicillium rubens, Penicillium, Eurotiales, Eurotiomycetidae, Ascomycota, Fungi

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2959..5241
DNA (2283bp) protein (761aa)
Pc22g03720 protein Tax=Penicillium chrysogenum (strain ATCC 28089 / DSM 1075 / Wisconsin 54-1255) RepID=B6HRS8_PENCW
Pc22g03720 protein {ECO:0000313|EMBL:CAP97660.1}; species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Penicillium; Penicillium chrysogenum complex.;" source="Penicillium chrysogenum (strain ATCC 28089 / DSM 1075 / Wisconsin; 54-1255) (Penicillium notatum).;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_4444_7
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

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5331..6479
DNA (1149bp) protein (383aa)
TPR repeat protein Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IIM3_KORVE
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
PLM4_65_b1_redo_sep16_scaffold_4444_8
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

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comp(7144..8502)
DNA (1359bp) protein (453aa)
Fis family transcriptional regulator; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX bin=RBG_19FT_COMBO_Aminicenantes_65_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
putative NtrC family two-component response regulator
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_4444_9
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(8499..9911)
DNA (1413bp) protein (471aa)
degP4; S1C family peptidase bin=CNBR_ACIDO species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
degP-2; periplasmic trypsin-like serine protease lipoprotein DegP
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM4_65_b1_redo_sep16_scaffold_4444_10
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(9928..11952)
DNA (2025bp) protein (675aa)
DNA ligase (EC:6.5.1.2); K01972 DNA ligase (NAD+) [EC:6.5.1.2] bin=RBG_16_Aminicenantes_66_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_66_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
NAD-dependent DNA ligase (EC:6.5.1.2)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_4444_11
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(11977..12987)
DNA (1011bp) protein (337aa)
ispB; octaprenyl diphosphate synthase; K02523 octaprenyl-diphosphate synthase [EC:2.5.1.90] bin=CNBR_ACIDO species=Geobacter bemidjiensis genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
trans-hexaprenyltranstransferase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_4444_12
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(12990..13478)
DNA (489bp) protein (163aa)
UPF0234 protein ACP_2840 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F3Q1_ACIC5
nucleotide-binding protein
UPF0234 protein ACP_2840 {ECO:0000256|HAMAP-Rule:MF_00632}; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670 /; NBRC 15755 / NCIMB 13165 / 161).;"
PLM4_65_b1_redo_sep16_scaffold_4444_13
Anaeromyxobacter sp. PSR-1, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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13715..14128
DNA (414bp) protein (138aa)
Isocitrate lyase Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=Q2IDV8_ANADE
malate synthase A
Malate synthase {ECO:0000313|EMBL:GAO02866.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. PSR-1.;"
PLM4_65_b1_redo_sep16_scaffold_4444_14
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(14130..14966)
DNA (837bp) protein (279aa)
Hydrolase, TatD family {ECO:0000313|EMBL:CDM65307.1}; EC=3.1.21.- {ECO:0000313|EMBL:CDM65307.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
TatD family hydrolase; K03424 TatD DNase family protein [EC:3.1.21.-] bin=RBG_16_Aminicenantes_63_16_plus species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
TatD family hydrolase
Displaying 14 items

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