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PLM4_65_b1_redo_sep16_scaffold_4450

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_4450_1
Kangiella koreensis, Kangiella, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1..2295)
DNA (2295bp) protein (765aa)
Multicopper oxidase type 3 Tax=Kangiella koreensis (strain DSM 16069 / KCTC 12182 / SW-125) RepID=C7RAY6_KANKD
multicopper oxidase type 3
Multicopper oxidase type 3 {ECO:0000313|EMBL:ACV26428.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Kangiella.;" source="Kangiella koreensis (strain DSM 16069 / KCTC 12182 / SW-125).;"
PLM4_65_b1_redo_sep16_scaffold_4450_2
Streptomyces mobaraensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(2428..4377)
DNA (1950bp) protein (650aa)
Putative integral membrane protein Tax=Streptomyces mobaraensis NBRC 13819 = DSM 40847 RepID=M3BBE7_STRMB
Putative integral membrane protein {ECO:0000313|EMBL:EME96869.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces mobaraensis NBRC 13819 = DSM 40847.;"
copper-binding protein
PLM4_65_b1_redo_sep16_scaffold_4450_3
Thermobaculum terrenum, Thermobaculum, Bacteria

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comp(4379..5008)
DNA (630bp) protein (210aa)
Uncharacterized protein Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CB69_THET1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACZ42034.1}; Flags: Precursor;; species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).;"
PLM4_65_b1_redo_sep16_scaffold_4450_4
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

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comp(5118..6239)
DNA (1122bp) protein (374aa)
Dehydrogenases (Flavoproteins) Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LE48_CHLTF
dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_65_b1_redo_sep16_scaffold_4450_5
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(6286..7653)
DNA (1368bp) protein (456aa)
Amino acid carrier protein Tax=Thermoanaerobacter ethanolicus CCSD1 RepID=C7IUI2_THEET
amino acid carrier protein
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_65_b1_redo_sep16_scaffold_4450_6
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(7776..8195)
DNA (420bp) protein (140aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9D6_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH39113.1}; species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC; 100505).;"
PLM4_65_b1_redo_sep16_scaffold_4450_7
RBG_13_Planctomycetes_60_9_curated, Phycisphaerae, Planctomycetes, Bacteria

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comp(8280..10145)
DNA (1866bp) protein (622aa)
Sugar phosphate isomerase bin=GWF2_Lentisphaerae_49_21 species=Spirochaeta smaragdinae genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
hypothetical protein
Tax=RBG_13_Planctomycetes_60_9_curated
PLM4_65_b1_redo_sep16_scaffold_4450_8
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(10219..10719)
DNA (501bp) protein (167aa)
3-isopropylmalate dehydratase small subunit; K01704 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
leuD-1; 3-isopropylmalate dehydratase, small subunit (EC:4.2.1.33)
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_4450_9
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(10722..12011)
DNA (1290bp) protein (430aa)
3-isopropylmalate dehydratase large subunit bin=GWA2_Ignavibacteriae_54_16_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWA2_Ignavibacteriae_54_16_partial organism_group=Ignavibacteria
homoaconitate hydratase family protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_4450_10
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(12021..13223)
DNA (1203bp) protein (401aa)
L-carnitine dehydratase/bile acid-inducible protein F bin=GWA2_Elusimicrobia_51_34 species=Thalassospira xiamenensis genus=Thalassospira taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_51_34 organism_group=Elusimicrobia
L-carnitine dehydratase/bile acid-inducible protein F
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_4450_11
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(13220..14170)
DNA (951bp) protein (317aa)
hydroxymethylglutaryl-CoA lyase (EC:4.1.3.4)
Hydroxymethylglutaryl-CoA lyase bin=GWA2_Elusimicrobia_56_46 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWA2_Elusimicrobia_56_46 organism_group=Elusimicrobia organism_desc=Good
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_4450_12
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(14167..14949)
DNA (783bp) protein (261aa)
Isocitrate/isopropylmalate dehydrogenase Tax=Thermoplasmatales archaeon SCGC AB-539-C06 RepID=N6WJP3_9EURY bin=16ft_combo_ws3_JS1 species=Thermoplasmatales archaeon SCGC AB-539-C06 genus=unknown taxon_order=Thermoplasmatales taxon_class=Thermoplasmata phylum=Euryarchaeota tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
isocitrate/isopropylmalate dehydrogenase
Tax=RBG_16_Acidobacteria_70_10_curated
Displaying 12 items

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