ggKbase home page

PLM4_65_b1_redo_sep16_scaffold_1013

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_1013_1
Gloeobacter kilaueensis, Gloeobacter, Gloeobacterales, Gloeobacteria, Cyanobacteria, Bacteria

Not on your lists

3..4424
DNA (4422bp) protein (1474aa)
Uncharacterized protein Tax=Gloeobacter kilaueensis JS1 RepID=U5QPH2_9CYAN
Uncharacterized protein {ECO:0000313|EMBL:AGY59509.1}; species="Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacter.;" source="Gloeobacter kilaueensis JS1.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_1013_2
unknown

Not on your lists

4518..4700
DNA (183bp) protein (61aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1013_3
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4702..4959
DNA (258bp) protein (86aa)
Uncharacterized protein Tax=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) RepID=Q39Y66_GEOMG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB30808.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
PLM4_65_b1_redo_sep16_scaffold_1013_4
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

4959..5993
DNA (1035bp) protein (345aa)
Radical SAM domain protein Tax=Thiocapsa marina 5811 RepID=F9UIW6_9GAMM
radical SAM domain protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1013_5
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

5990..6799
DNA (810bp) protein (270aa)
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1013_6
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7174..8568
DNA (1395bp) protein (465aa)
Uncharacterized protein {ECO:0000313|EMBL:CDH45013.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
PLM4_65_b1_redo_sep16_scaffold_1013_7
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(8599..9162)
DNA (564bp) protein (188aa)
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1013_8
unknown

Not on your lists

comp(9162..9341)
DNA (180bp) protein (60aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1013_9
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(9338..10774)
DNA (1437bp) protein (479aa)
id=12555928 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
patatin
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_65_b1_redo_sep16_scaffold_1013_10
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(10771..11805)
DNA (1035bp) protein (345aa)
DNA polymerase III, epsilon subunit Tax=Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU 3971) RepID=C6W9G7_ACTMD
hypothetical protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1013_11
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(11814..12287)
DNA (474bp) protein (158aa)
GreA/GreB family elongation factor; K03624 transcription elongation factor GreA bin=CNBR_ACIDO species=Nitrospina sp. AB-629-B18 genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
GreA/GreB family elongation factor
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1013_12
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

Not on your lists

12366..13187
DNA (822bp) protein (274aa)
rRNA methylase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LDT2_CHLTF
rRNA methylase
rRNA methylase {ECO:0000313|EMBL:AEP12940.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum (strain B).;"
PLM4_65_b1_redo_sep16_scaffold_1013_13
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

13198..14664
DNA (1467bp) protein (489aa)
Putative polynucleotide enzyme with nucleotide triphosphate hydrolase domain bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
recombination protein MgsA
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM4_65_b1_redo_sep16_scaffold_1013_14
R_Deltaproteobacteria_44_9, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14624..15895)
DNA (1272bp) protein (424aa)
Diguanylate phosphodiesterase bin=GWD2_Nitrospirae-related_57_8 species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
diguanylate phosphodiesterase
Tax=RIFCSPLOWO2_02_Deltaproteobacteria_44_9_curated
PLM4_65_b1_redo_sep16_scaffold_1013_15
unknown

Not on your lists

comp(15964..16719)
DNA (756bp) protein (252aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1013_16
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(16721..19630)
DNA (2910bp) protein (970aa)
gcvP; glycine dehydrogenase, glycine cleavage system P protein (EC:1.4.4.2)
Glycine dehydrogenase (decarboxylating) {ECO:0000256|HAMAP-Rule:MF_00711}; EC=1.4.4.2 {ECO:0000256|HAMAP-Rule:MF_00711, ECO:0000313|EMBL:CBK40091.1};; Glycine cleavage system P-protein {ECO:0000256|HAMAP-Rule:MF_00711}; Glycine decarboxylase {ECO:0000256|HAMAP-Rule:MF_00711}; Glycine dehydrogenase (aminomethyl-transferring) {ECO:0000256|HAMAP-Rule:MF_00711}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
Glycine dehydrogenase (decarboxylating) Tax=Candidatus Nitrospira defluvii RepID=D8PA32_9BACT
PLM4_65_b1_redo_sep16_scaffold_1013_17
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(19640..20026)
DNA (387bp) protein (129aa)
Glycine cleavage system H protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02BS3_SOLUE
glycine cleavage system H protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1013_18
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(20037..21137)
DNA (1101bp) protein (367aa)
glycine cleavage system T protein (EC:2.1.2.10)
glycine cleavage system protein T Tax=Brevibacillus laterosporus RepID=UPI000366EF02
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1013_19
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

21329..22924
DNA (1596bp) protein (532aa)
Type IV-A pilus assembly ATPase PilB Tax=Hippea maritima (strain ATCC 700847 / DSM 10411 / MH2) RepID=F2LUC2_HIPMA
type IV-A pilus assembly ATPase PilB
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1013_20
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(23035..24027)
DNA (993bp) protein (331aa)
cytidylate kinase (EC:2.7.4.14)
Cytidylate kinase Tax=Sulfobacillus acidophilus RepID=F8I590_SULAT
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1013_21
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(24024..25142)
DNA (1119bp) protein (373aa)
histidinol-phosphate aminotransferase Tax=Thioalkalivibrio sp. ALE30 RepID=UPI00035E9E09
histidinol-phosphate aminotransferase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1013_22
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(25139..25951)
DNA (813bp) protein (271aa)
ribosomal large subunit pseudouridine synthase B; K06178 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rluB; 23S rRNA pseudouridylate synthase B (EC:4.2.1.70)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
PLM4_65_b1_redo_sep16_scaffold_1013_23
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(26075..26932)
DNA (858bp) protein (286aa)
Putative uncharacterized protein Tax=uncultured marine bacterium 105 RepID=Q6SI35_9BACT
chromosome segregation and condensation protein ScpB
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1013_24
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(26952..27773)
DNA (822bp) protein (274aa)
scpA; chromosome segregation and condensation protein ScpA; K05896 segregation and condensation protein A bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
scpA; chromosome segregation and condensation protein ScpA
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1013_25
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(27770..28768)
DNA (999bp) protein (333aa)
trpS; tryptophanyl-tRNA synthetase (Tryptophan--tRNA ligase) (TrpRS) (EC:6.1.1.2)
Tryptophanyl-tRNA synthetase (Tryptophan--tRNA ligase) (TrpRS) Tax=Candidatus Methylomirabilis oxyfera RepID=D5ML78_9BACT
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1013_26
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(28775..29422)
DNA (648bp) protein (216aa)
M50B family peptidase (EC:3.4.24.-)
Membrane protein, putative Tax=uncultured marine bacterium 105 RepID=Q6SI32_9BACT
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1013_27
BJP_08E140C01_10KDA_Chromatiales_49_130, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29518..30051
DNA (534bp) protein (178aa)
hypothetical protein Tax=Rheinheimera perlucida RepID=UPI000367AE8A
hypothetical protein
Tax=BJP_08E140C01_10KDA_Chromatiales_49_130
PLM4_65_b1_redo_sep16_scaffold_1013_28
Deinococcus geothermalis, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(30295..30768)
DNA (474bp) protein (158aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.;" source="Deinococcus geothermalis (strain DSM 11300).;"
hypothetical protein Tax=Deinococcus apachensis RepID=UPI00037F8A0D
pseudouridine synthase
Displaying 28 items

View Taxonomy