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PLM4_65_b1_redo_sep16_scaffold_1233

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_1233_1
R_Betaproteobacteria_66_14, Betaproteobacteria, Proteobacteria, Bacteria

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3..2711
DNA (2709bp) protein (903aa)
hypothetical protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Prevotella ruminicola genus=Prevotella taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_66_14_curated
PLM4_65_b1_redo_sep16_scaffold_1233_2
unknown

Not on your lists

2723..3208
DNA (486bp) protein (162aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1233_3
R_Betaproteobacteria_66_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3269..4303
DNA (1035bp) protein (345aa)
Putative uncharacterized protein bin=GWC2_Ignavibacteria_56_12 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_66_14_curated
PLM4_65_b1_redo_sep16_scaffold_1233_4
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(4308..4868)
DNA (561bp) protein (187aa)
hypothetical protein Tax=Methylohalobius crimeensis RepID=UPI0003B33A6A
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
PLM4_65_b1_redo_sep16_scaffold_1233_5
gamma proteobacterium HIMB55, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5321..5683
DNA (363bp) protein (121aa)
hypothetical protein Tax=Sandarakinorhabdus sp. AAP62 RepID=UPI0002F048D1
Cupin domain-containing protein {ECO:0000313|EMBL:EHQ57756.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade.;" source="gamma proteobacterium HIMB55.;"
cupin
PLM4_65_b1_redo_sep16_scaffold_1233_6
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5684..6046
DNA (363bp) protein (121aa)
Putative uncharacterized protein Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2J461_RHOP2
Membrane protein {ECO:0000313|EMBL:KIZ45584.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_1233_7
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

6129..6707
DNA (579bp) protein (193aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00036C906D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG92494.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM4_65_b1_redo_sep16_scaffold_1233_8
RBG_16_Ignavibacteria_34_14_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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6730..7245
DNA (516bp) protein (172aa)
DinB Tax=Chlorobium ferrooxidans DSM 13031 RepID=Q0YUH6_9CHLB bin=RAAC39 species=Chlorobium ferrooxidans genus=Chlorobium taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=RAAC39 organism_group=Ignavibacteria
DinB family protein
Tax=RBG_16_Ignavibacteria_34_14_curated
PLM4_65_b1_redo_sep16_scaffold_1233_9
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

7323..9491
DNA (2169bp) protein (723aa)
Serine/threonine protein kinase with TPR repeats Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ITM5_KORVE
serine/threonin protein kinase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1233_10
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(9496..10278)
DNA (783bp) protein (261aa)
Putative Enoyl-CoA hydratase, membrane protein Tax=mine drainage metagenome PF93_9ZZZZ">RepID=E6PF93_9ZZZZ
enoyl-CoA hydratase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1233_11
BJP_IG2102_Methanoregula_52_95, Methanoregula, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

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comp(10309..11211)
DNA (903bp) protein (301aa)
hypothetical protein Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI00037BC83E
hypothetical protein
Tax=BJP_IG2102_Methanoregula_52_95
PLM4_65_b1_redo_sep16_scaffold_1233_12
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(11228..12838)
DNA (1611bp) protein (537aa)
dihydroorotase (EC:3.5.2.3)
Dihydroorotase Tax=Solibacter usitatus (strain Ellin6076) RepID=Q020P9_SOLUE
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_1233_13
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(12835..13722)
DNA (888bp) protein (296aa)
hypothetical protein bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
hypothetical protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1233_14
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(13850..15457)
DNA (1608bp) protein (536aa)
Acetyl-CoA carboxylase carboxyltransferase Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I9C6_CALAS
accB; acetyl-CoA carboxylase carboxyltransferase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1233_15
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(15464..16594)
DNA (1131bp) protein (377aa)
6-phosphofructokinase (EC:2.7.1.11)
6-phosphofructokinase bin=GWC2_Elusimicrobia_51_8 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Elusimicrobia_51_8 organism_group=Elusimicrobia
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1233_16
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(16698..17465)
DNA (768bp) protein (256aa)
ABC transporter Tax=Pseudonocardia sp. P1 RepID=UPI0001FFEFD3
ABC-2 type transporter
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1233_17
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(17462..18439)
DNA (978bp) protein (326aa)
daunorubicin ABC transporter ATPase Tax=Dietzia alimentaria RepID=UPI000299E20F
Daunorubicin resistance ABC transporter ATP-binding subunit {ECO:0000313|EMBL:CDM65848.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
daunorubicin resistance ABC transporter ATPase
PLM4_65_b1_redo_sep16_scaffold_1233_18
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(18436..19602)
DNA (1167bp) protein (389aa)
id=12555410 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM4_65_b1_redo_sep16_scaffold_1233_19
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(19605..20894)
DNA (1290bp) protein (430aa)
hutI; imidazolonepropionase HutI (EC:3.5.2.7) bin=RBG_16_Aminicenantes_63_16_plus species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
imidazolonepropionase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1233_20
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(20891..21181)
DNA (291bp) protein (97aa)
UPF0235 protein Desca_2288 Tax=Desulfotomaculum RepID=F6B392_DESCC
hypothetical protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1233_21
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(21188..21691)
DNA (504bp) protein (168aa)
cell-division initiation protein
Cell-division initiation protein bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1233_22
RBG_16_Anaeromyxobacter_69_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21798..22526
DNA (729bp) protein (243aa)
Rhomboid-like protein Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=Q2IM13_ANADE
rhomboid-like protein
Tax=RBG_16_Anaeromyxobacter_69_14_curated
PLM4_65_b1_redo_sep16_scaffold_1233_23
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(22546..23238)
DNA (693bp) protein (231aa)
yggS; hypothetical protein bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1233_24
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(23235..24170)
DNA (936bp) protein (312aa)
TPR repeat-containing protein bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
peptidase S1 and S6 chymotrypsin/Hap
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1233_25
CG_Omnitr_06, Omnitrophica, Bacteria

Not on your lists

comp(24242..24610)
DNA (369bp) protein (123aa)
6-carboxy-5,6,7,8-tetrahydropterin synthase Tax=Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2) RepID=D6Z266_DESAT
6-pyruvoyl tetrahydropterin synthase and hypothetical protein
Tax=CG_Omnitr_06
PLM4_65_b1_redo_sep16_scaffold_1233_26
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(24713..25477)
DNA (765bp) protein (255aa)
hypothetical protein
activator of Hsp90 ATPase 1 family protein bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1233_27
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(25474..25911)
DNA (438bp) protein (146aa)
hypothetical protein Tax=Streptomyces sp. CNT302 RepID=UPI000375E2BC
putative ArsR-family transcriptional regulator
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1233_28
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25920..26810
DNA (891bp) protein (297aa)
membrane protein Tax=Nevskia ramosa RepID=UPI0003B5EE59
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
PLM4_65_b1_redo_sep16_scaffold_1233_29
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(26915..28207)
DNA (1293bp) protein (431aa)
Membrane protein involved in aromatic hydrocarbon degradation Tax=Caldithrix abyssi DSM 13497 RepID=H1XRQ1_9BACT bin=16ft_combo_ws3_JS1 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
aromatic hydrocarbon degradation membrane protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1233_30
RBG_13_Deltaproteobacteria_65_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28626..33917
DNA (5292bp) protein (1764aa)
Putative uncharacterized protein bin=GWF2_Lentisphaerae_57_35 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
hypothetical protein
Tax=RBG_13_Deltaproteobacteria_65_10_curated
Displaying items 1-30 of 31 in total

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