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PLM4_65_b1_redo_sep16_scaffold_1512

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_1512_1
Methylobacter tundripaludum, Methylobacter, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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3..587
DNA (585bp) protein (195aa)
Tetratricopeptide TPR_1 repeat-containing protein Tax=Methylobacter tundripaludum SV96 RepID=G3IY39_9GAMM
Tetratricopeptide TPR_1 repeat-containing protein {ECO:0000313|EMBL:EGW21136.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylobacter.;" source="Methylobacter tundripaludum SV96.;"
pentatricopeptide repeat-containing protein
PLM4_65_b1_redo_sep16_scaffold_1512_2
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(917..1819)
DNA (903bp) protein (301aa)
Peptidase M23B Tax=Gloeobacter kilaueensis JS1 RepID=U5QFW4_9CYAN
peptidase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1512_3
CG_Anaero_02, Anaerolineae, Chloroflexi, Bacteria

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comp(1816..3210)
DNA (1395bp) protein (465aa)
selA; L-seryl-tRNA(Sec) selenium transferase (Selenocysteine synthase) (Sec synthase) (Selenocysteinyl-tRNA(Sec) synthase) (EC:2.9.1.1) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
selenocysteine synthase
Tax=CG_Anaero_02
PLM4_65_b1_redo_sep16_scaffold_1512_4
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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3242..3649
DNA (408bp) protein (136aa)
hypothetical protein bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1512_5
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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3650..4231
DNA (582bp) protein (194aa)
Putative uncharacterized protein Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IV26_KORVE
hypothetical protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1512_6
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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4311..4997
DNA (687bp) protein (229aa)
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1512_7
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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4994..6562
DNA (1569bp) protein (523aa)
purH; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (EC:2.1.2.3)
Bifunctional purine biosynthesis protein PurH Tax=Burkholderia glumae (strain BGR1) RepID=C5AB32_BURGB
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1512_8
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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6787..9624
DNA (2838bp) protein (946aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI00037F2EBC
serine/threonin protein kinase
Serine/threonine protein kinase with TPR repeats {ECO:0000313|EMBL:ABJ84784.1}; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM4_65_b1_redo_sep16_scaffold_1512_9
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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9691..12531
DNA (2841bp) protein (947aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI00037F2EBC
serine/threonin protein kinase
Serine/threonine protein kinase with TPR repeats {ECO:0000313|EMBL:ABJ84784.1}; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM4_65_b1_redo_sep16_scaffold_1512_10
RBG_13_Aminicenantes_63_10_curated, Aminicenantes, Bacteria

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comp(12441..13490)
DNA (1050bp) protein (350aa)
hypothetical protein bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
PfkB domain-containing protein
Tax=RBG_13_Aminicenantes_63_10_curated
PLM4_65_b1_redo_sep16_scaffold_1512_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(13541..14869)
DNA (1329bp) protein (443aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
O-antigen polymerase
Tax=GWA2_Rokubacteria_73_35_curated
PLM4_65_b1_redo_sep16_scaffold_1512_12
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

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comp(14890..15060)
DNA (171bp) protein (57aa)
hypothetical protein; K09791 hypothetical protein bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_1512_13
unknown

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15195..15491
DNA (297bp) protein (99aa)
id=12556549 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
PLM4_65_b1_redo_sep16_scaffold_1512_14
R_Acidobacteria_67_28, Acidobacteria, Bacteria

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15689..17656
DNA (1968bp) protein (656aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000360B425
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
PLM4_65_b1_redo_sep16_scaffold_1512_15
unknown

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17598..18239
DNA (642bp) protein (214aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1512_16
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

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18239..19168
DNA (930bp) protein (310aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum (strain B).;"
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LJA7_CHLTF
PLM4_65_b1_redo_sep16_scaffold_1512_17
Anaeromyxobacter sp. PSR-1, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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19190..19516
DNA (327bp) protein (109aa)
Putative septation protein SpoVG Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=SP5G_ANADE
regulatory protein SpoVG
Putative septation protein SpoVG {ECO:0000256|HAMAP-Rule:MF_00819}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. PSR-1.;"
PLM4_65_b1_redo_sep16_scaffold_1512_trna_1
unknown

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19532..19609
DNA (78bp)
transferRNA Gln
PLM4_65_b1_redo_sep16_scaffold_1512_18
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

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19635..20576
DNA (942bp) protein (314aa)
ribose-phosphate pyrophosphokinase (EC:2.7.6.1); K00948 ribose-phosphate pyrophosphokinase [EC:2.7.6.1] bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
prsA; ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
PLM4_65_b1_redo_sep16_scaffold_1512_19
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists


20625..21353
DNA (729bp) protein (243aa)
hypothetical protein bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
50S ribosomal protein L25
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
PLM4_65_b1_redo_sep16_scaffold_1512_20
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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21363..21923
DNA (561bp) protein (187aa)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CJA9_9FIRM
PLM4_65_b1_redo_sep16_scaffold_1512_21
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists


22062..22460
DNA (399bp) protein (133aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00035F2CB1
30S ribosomal protein S6
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1512_22
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists


22457..22801
DNA (345bp) protein (115aa)
rpsR; 30S ribosomal protein S18; K02963 small subunit ribosomal protein S18 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rpsR; 30S ribosomal protein S18
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1512_23
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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22831..23817
DNA (987bp) protein (329aa)
Putative uncharacterized protein bin=GWC2_Geobacteraceae_55_20 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
membrane protein
Tax=GWC2_Geobacteraceae_55_20_curated
PLM4_65_b1_redo_sep16_scaffold_1512_24
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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23837..24283
DNA (447bp) protein (149aa)
50S ribosomal protein L9 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI000377D14A
rplI; 50S ribosomal protein L9
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1512_25
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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24477..25532
DNA (1056bp) protein (352aa)
replicative DNA helicase; K02314 replicative DNA helicase [EC:3.6.4.12] bin=CNBR_ACIDO species=Desulfurivibrio alkaliphilus genus=Desulfurivibrio taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
replicative DNA helicase
Tax=RBG_16_Acidobacteria_70_10_curated
Displaying 26 items

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