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PLM4_65_b1_redo_sep16_scaffold_1710

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_1710_1
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(2..1150)
DNA (1149bp) protein (383aa)
Adenylate/guanylate cyclase with GAF sensor and FHA domain Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9B018_HERA2
adenylate cyclase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1710_2
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(1196..2176)
DNA (981bp) protein (327aa)
gpsA1; glycerol-3-phosphate dehydrogenase (NAD(P)(+)) (EC:1.1.1.94)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] Tax=Sorangium cellulosum (strain So ce56) RepID=A9ET32_SORC5
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1710_3
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(2173..2781)
DNA (609bp) protein (203aa)
Glycerol-3-phosphate acyltransferase Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=PLSY_ANADF
membrane protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1710_4
RBG_13_Deltaproteobacteria_61_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2809..3366)
DNA (558bp) protein (186aa)
2'-5' RNA ligase Tax=uncultured prokaryote RepID=H5SIR3_9ZZZZ bin=RBG9 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG9 organism_group=Chloroflexi
hypothetical protein
Tax=RBG_13_Deltaproteobacteria_61_14_curated
PLM4_65_b1_redo_sep16_scaffold_1710_5
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(3363..4622)
DNA (1260bp) protein (420aa)
CinA-like protein Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LJA0_CHLTF
CinA-like protein {ECO:0000256|HAMAP-Rule:MF_00226}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
competence/damage-inducible protein CinA C-terminal domain-containing protein
PLM4_65_b1_redo_sep16_scaffold_1710_6
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(4619..5086)
DNA (468bp) protein (156aa)
Phosphatidylglycerophosphatase A Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F6H3_ACIC5
phosphatidylglycerophosphatase A
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1710_7
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(5108..6157)
DNA (1050bp) protein (350aa)
Putative uncharacterized protein Tax=uncultured Acidobacteria bacterium HF0770_27F21 RepID=E0XYT4_9BACT
membrane protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM4_65_b1_redo_sep16_scaffold_1710_8
unknown

Not on your lists

comp(6154..6339)
DNA (186bp) protein (62aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1710_9
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(6400..7809)
DNA (1410bp) protein (470aa)
Fis family transcriptional regulator; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Fis family transcriptional regulator
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1710_10
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(7817..10012)
DNA (2196bp) protein (732aa)
PAS/PAC sensor signal transduction histidine kinase; K13598 two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] bin=CNBR_ACIDO species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
sensor histidine kinase, HAMP and PAS domain-containing
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1710_11
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(10338..10796)
DNA (459bp) protein (153aa)
Transcriptional repressor NrdR Tax=uncultured Acidobacteria bacterium RepID=H5SFE3_9BACT
transcriptional regulator NrdR
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1710_12
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(10793..11833)
DNA (1041bp) protein (347aa)
hypothetical protein; K07027 bin=CNBR_ACIDO species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1710_13
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

12024..12602
DNA (579bp) protein (193aa)
RNA polymerase sigma factor Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02AX4_SOLUE
ECF subfamily RNA polymerase sigma-24 factor
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1710_14
RBG_13_Aminicenantes_63_10_curated, Aminicenantes, Bacteria

Not on your lists

12613..13239
DNA (627bp) protein (209aa)
Putative transmembrane anti-sigma factor Tax=Chlorobium phaeobacteroides (strain BS1) RepID=B3EJ96_CHLPB
transmembrane anti-sigma factor
Tax=RBG_13_Aminicenantes_63_10_curated
PLM4_65_b1_redo_sep16_scaffold_1710_15
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

13283..13834
DNA (552bp) protein (184aa)
Putative uncharacterized protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02AX6_SOLUE
hypothetical protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1710_16
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

13815..14018
DNA (204bp) protein (68aa)
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1710_17
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

14020..15582
DNA (1563bp) protein (521aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI0003828CF9
hypothetical protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1710_18
RLO_PLX_64_10, Bacteria

Not on your lists

15725..16627
DNA (903bp) protein (301aa)
phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6); K01923 phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
purC; phosphoribosylaminoimidazolesuccinocarboxamide synthase
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM4_65_b1_redo_sep16_scaffold_1710_19
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

16684..16887
DNA (204bp) protein (68aa)
Response regulator receiver protein Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IPD9_KORVE
response regulator receiver protein
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
PLM4_65_b1_redo_sep16_scaffold_1710_20
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(16927..17511)
DNA (585bp) protein (195aa)
Sortase family protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q023B0_SOLUE bin=16ft_combo_ws3_JS1 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
sortase family protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_65_b1_redo_sep16_scaffold_1710_21
unknown

Not on your lists

comp(17517..18065)
DNA (549bp) protein (183aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1710_22
Burkholderia glumae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18255..18674
DNA (420bp) protein (140aa)
Sigma-54 dependent DNA-binding response regulator Tax=Burkholderia glumae (strain BGR1) RepID=C5ADA5_BURGB
Sigma-54 dependent DNA-binding response regulator
Sigma-54 dependent DNA-binding response regulator {ECO:0000313|EMBL:ACR28150.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glumae (strain BGR1).;"
PLM4_65_b1_redo_sep16_scaffold_1710_23
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18721..20058)
DNA (1338bp) protein (446aa)
Response regulator in two-component reguatory system (EBP family) Tax=Ralstonia solanacearum SD54 RepID=V5AJE1_RALSL
Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
Probable sigma-54 interacting response regulator transcription regulator protein {ECO:0000313|EMBL:CAD18818.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum (strain GMI1000) (Pseudomonas solanacearum).;"
PLM4_65_b1_redo_sep16_scaffold_1710_24
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(20063..21832)
DNA (1770bp) protein (590aa)
hypothetical protein Tax=BRC1 bacterium SCGC AAA252-M09 RepID=UPI0003638A8B
signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM4_65_b1_redo_sep16_scaffold_1710_25
RBG_13_Caldithrix_44_9_curated, Caldithrix, Bacteria

Not on your lists

comp(21904..22542)
DNA (639bp) protein (213aa)
Tax=RBG_13_Caldithrix_44_9_curated
PLM4_65_b1_redo_sep16_scaffold_1710_26
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

22823..23287
DNA (465bp) protein (155aa)
Transport-associated protein Tax=Pedosphaera parvula Ellin514 RepID=B9XMW7_9BACT
Transport-associated protein {ECO:0000313|EMBL:EEF58763.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_1710_27
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

23491..23781
DNA (291bp) protein (97aa)
chaperonin Cpn10
10 kDa chaperonin bin=GWC2_Methylomirabilis_70_24 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1710_28
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

23800..24096
DNA (297bp) protein (99aa)
groEL; chaperonin GroEL; K04077 chaperonin GroEL bin=CNBR_ACIDO species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
groEL; chaperonin GroEL
Tax=RBG_16_Acidobacteria_70_10_curated
Displaying 28 items

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