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PLM3-1_170_b1_sep16_scaffold_1216

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b1_sep16_scaffold_1216_1
CSP1_5_NC10, NC10, Bacteria

Not on your lists

1..675
DNA (675bp) protein (225aa)
hisI; histidine biosynthesis bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase (EC:3.5.4.19 3.6.1.31) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
hisI; histidine biosynthesis bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase (EC:3.5.4.19 3.6.1.31)
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_1216_2
CSP1_5_NC10, NC10, Bacteria

Not on your lists

770..967
DNA (198bp) protein (66aa)
rpsU; 30S ribosomal protein S21 bin=bin3_NC10 species=unknown genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin3_NC10 organism_group=NC10
30S ribosomal protein S21
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_1216_3
CSP1_5_NC10, NC10, Bacteria

Not on your lists

969..1421
DNA (453bp) protein (151aa)
hypothetical protein bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_1216_4
CSP1_5_NC10, NC10, Bacteria

Not on your lists

1506..3896
DNA (2391bp) protein (797aa)
MutS2 protein bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
MutS2 protein
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_1216_5
CSP1_5_NC10, NC10, Bacteria

Not on your lists

3946..5682
DNA (1737bp) protein (579aa)
DNA primase (EC:2.7.7.-) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
DNA primase (EC:2.7.7.-)
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_1216_6
CSP1_5_NC10, NC10, Bacteria

Not on your lists

5743..7509
DNA (1767bp) protein (589aa)
rpoD; RNA polymerase sigma factor rpoD (Sigma-80) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
rpoD; RNA polymerase sigma factor rpoD (Sigma-80)
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_1216_trna_1
unknown

Not on your lists

7610..7682
DNA (73bp)
transferRNA Met
PLM3-1_170_b1_sep16_scaffold_1216_7
CSP1_5_NC10, NC10, Bacteria

Not on your lists

7710..8414
DNA (705bp) protein (235aa)
hypothetical protein bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_1216_8
CSP1_5_NC10, NC10, Bacteria

Not on your lists

8416..9042
DNA (627bp) protein (209aa)
ribonuclease H; K15634 probable phosphoglycerate mutase [EC:5.4.2.1] bin=bin3_NC10 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin3_NC10 organism_group=NC10
rnhA; RNase H
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_1216_9
CSP1_5_NC10, NC10, Bacteria

Not on your lists

9081..9506
DNA (426bp) protein (142aa)
hypothetical protein bin=bin3_NC10 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_1216_10
CSP1_5_NC10, NC10, Bacteria

Not on your lists

9800..10645
DNA (846bp) protein (282aa)
lpxC; UDP-3-O-acyl N-acetylglucosamine deacetylase (EC:3.5.1.-) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
lpxC; UDP-3-O-acyl N-acetylglucosamine deacetylase (EC:3.5.1.-)
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_1216_11
CSP1_5_NC10, NC10, Bacteria

Not on your lists

10778..13015
DNA (2238bp) protein (746aa)
multi-sensor signal transduction histidine kinase; K13598 two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] bin=bin3_NC10 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
histidine kinase
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_1216_12
CSP1_5_NC10, NC10, Bacteria

Not on your lists

13024..14418
DNA (1395bp) protein (465aa)
sigma-54 dependent DNA-binding response regulator; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX bin=bin3_NC10 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin3_NC10 organism_group=NC10
Fis family transcriptional regulator
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_1216_13
CSP1_5_NC10, NC10, Bacteria

Not on your lists

14529..15119
DNA (591bp) protein (197aa)
hypothetical protein bin=bin3_NC10 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_1216_14
CSP1_5_NC10, NC10, Bacteria

Not on your lists

15176..16351
DNA (1176bp) protein (392aa)
hypothetical protein bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_1216_15
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(16388..16696)
DNA (309bp) protein (103aa)
hypothetical protein bin=bin3_NC10 species=Aquifex aeolicus genus=Aquifex taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_1216_16
CSP1_5_NC10, NC10, Bacteria

Not on your lists

16866..17000
DNA (135bp) protein (45aa)
id=14430497 bin=bin3_NC10 tax=bin3_NC10 organism_group=NC10
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_1216_17
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(17099..17308)
DNA (210bp) protein (70aa)
cspA; Cold shock protein, DNA binding bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
cspA; Cold shock protein, DNA binding
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_1216_18
CSP1_5_NC10, NC10, Bacteria

Not on your lists

17692..18615
DNA (924bp) protein (308aa)
galU; glucose-1-phosphate uridylyltransferase (EC:2.7.7.9) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
galU; glucose-1-phosphate uridylyltransferase (EC:2.7.7.9)
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_1216_19
CSP1_5_NC10, NC10, Bacteria

Not on your lists

18637..21099
DNA (2463bp) protein (821aa)
lon; ATP-dependent protease La (EC:3.4.21.53) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
lon; ATP-dependent protease La (EC:3.4.21.53)
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_1216_20
CSP1_5_NC10, NC10, Bacteria

Not on your lists

21136..22821
DNA (1686bp) protein (562aa)
rnjA; ribonuclease J 1 (RNase J1) (EC:3.1.-.-) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
rnjA; ribonuclease J 1 (RNase J1) (EC:3.1.-.-)
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_1216_21
CSP1_5_NC10, NC10, Bacteria

Not on your lists

22916..25132
DNA (2217bp) protein (739aa)
ftsK; DNA translocase bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
ftsK; DNA translocase
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_1216_22
CSP1_5_NC10, NC10, Bacteria

Not on your lists

25163..25804
DNA (642bp) protein (214aa)
Outer-membrane lipoprotein carrier protein bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
Outer-membrane lipoprotein carrier protein
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_1216_23
CSP1_5_NC10, NC10, Bacteria

Not on your lists

26031..28586
DNA (2556bp) protein (852aa)
hypothetical protein bin=bin3_NC10 species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_1216_24
CSP1_5_NC10, NC10, Bacteria

Not on your lists

28627..29085
DNA (459bp) protein (153aa)
phosphatidylglycerophosphatase A; K01095 phosphatidylglycerophosphatase A [EC:3.1.3.27] bin=bin3_NC10 species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
phosphatidylglycerophosphatase A
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_1216_25
CSP1_5_NC10, NC10, Bacteria

Not on your lists

29082..30338
DNA (1257bp) protein (419aa)
cinA; competence-damage inducible protein bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
cinA; competence-damage inducible protein
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_1216_26
CSP1_5_NC10, NC10, Bacteria

Not on your lists

30370..30936
DNA (567bp) protein (189aa)
2'-5' RNA ligase; K01975 2'-5' RNA ligase [EC:6.5.1.-] bin=bin3_NC10 species=Desulfotomaculum hydrothermale genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_1216_27
CSP1_5_NC10, NC10, Bacteria

Not on your lists

30936..32273
DNA (1338bp) protein (446aa)
glycerate 2-kinase (EC:2.7.1.-); K00050 hydroxypyruvate reductase [EC:1.1.1.81] bin=bin3_NC10 tax=bin3_NC10 organism_group=NC10
glycerate 2-kinase (EC:2.7.1.-)
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_1216_28
CSP1_5_NC10, NC10, Bacteria

Not on your lists


32365..32709
DNA (345bp) protein (115aa)
signal recognition particle subunit FFH/SRP54 (srp54); K03106 signal recognition particle subunit SRP54 bin=bin3_NC10 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin3_NC10 organism_group=NC10
signal recognition particle protein
Tax=CSP1_5_NC10
Displaying 29 items

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