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PLM3-1_170_b1_sep16_scaffold_4884

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b1_sep16_scaffold_4884_1
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3..521)
DNA (519bp) protein (173aa)
3-oxoacyl-[acyl-carrier-protein] reductase Tax=Phascolarctobacterium succinatutens YIT 12067 RepID=E8LGP1_9FIRM
3-oxoacyl-(acyl-carrier-protein) reductase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b1_sep16_scaffold_4884_2

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comp(523..693)
DNA (171bp) protein (57aa)
anthranilate synthase component I (EC:4.1.3.27)
anthranilate synthase subunit I Tax=Paenibacillus massiliensis RepID=UPI00036A0041
Uncharacterized protein {ECO:0000313|EMBL:KKK95231.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM3-1_170_b1_sep16_scaffold_4884_3
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

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comp(690..1988)
DNA (1299bp) protein (433aa)
det:DET1481 trpE; anthranilate synthase component I (EC:4.1.3.27); K01657 anthranilate synthase component I [EC:4.1.3.27] bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
anthranilate synthase component I (EC:4.1.3.27)
Tax=RBG_16_Chloroflexi_64_32_curated
PLM3-1_170_b1_sep16_scaffold_4884_4
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

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comp(1985..2989)
DNA (1005bp) protein (335aa)
tryptophanyl-tRNA synthetase (EC:6.1.1.2); K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2] bin=RBG_19FT_COMBO_GAL15_69_19 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
tryptophanyl-tRNA synthetase (EC:6.1.1.2)
Tax=RBG_16_Chloroflexi_64_32_curated
PLM3-1_170_b1_sep16_scaffold_4884_5
Microcystis aeruginosa, Microcystis, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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3383..3502
DNA (120bp) protein (40aa)
Genome sequencing data, contig C279 Tax=Microcystis aeruginosa PCC 7941 RepID=I4GLN9_MICAE
Genome sequencing data, contig C279 {ECO:0000313|EMBL:CCI08850.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Microcystis.;" source="Microcystis aeruginosa PCC 7941.;"
hypothetical protein
PLM3-1_170_b1_sep16_scaffold_4884_6
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

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comp(3598..4416)
DNA (819bp) protein (273aa)
endonuclease/exonuclease/phosphatase
Tax=RBG_16_Chloroflexi_64_32_curated
PLM3-1_170_b1_sep16_scaffold_4884_7
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

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comp(4413..5003)
DNA (591bp) protein (197aa)
Guanylate kinase Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9AW29_HERA2
gmk; guanylate kinase
Tax=RBG_16_Chloroflexi_68_14_curated
PLM3-1_170_b1_sep16_scaffold_4884_8

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comp(5008..5301)
DNA (294bp) protein (98aa)
UPF0296 protein DehaBAV1_0033 Tax=Dehalococcoides mccartyi RepID=Y033_DEHSB
Uncharacterized protein {ECO:0000313|EMBL:KKL14221.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
PLM3-1_170_b1_sep16_scaffold_4884_9

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comp(5352..5621)
DNA (270bp) protein (90aa)
3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19)
3-phosphoshikimate 1-carboxyvinyltransferase Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Q2RIU4_MOOTA
Uncharacterized protein {ECO:0000313|EMBL:KKL14220.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM3-1_170_b1_sep16_scaffold_4884_10

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comp(5624..6634)
DNA (1011bp) protein (337aa)
hau:Haur_0970 3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19); K00800 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
Marine sediment metagenome DNA, contig: S01H1_C00252 {ECO:0000313|EMBL:GAF74416.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
3-phosphoshikimate 1-carboxyvinyltransferase
PLM3-1_170_b1_sep16_scaffold_4884_11

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comp(6644..7684)
DNA (1041bp) protein (347aa)
Prephenate dehydrogenase Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C1X3_SPHTD
Uncharacterized protein {ECO:0000313|EMBL:KKK68082.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
prephenate dehydrogenase
PLM3-1_170_b1_sep16_scaffold_4884_12
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

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comp(7836..8339)
DNA (504bp) protein (168aa)
Uncharacterized protein Tax=Nitrolancetus hollandicus Lb RepID=I4ENG1_9CHLR
hypothetical protein
Tax=RBG_16_Chloroflexi_68_14_curated
PLM3-1_170_b1_sep16_scaffold_4884_13

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comp(8332..9063)
DNA (732bp) protein (244aa)
Peptidase M50 Tax=uncultured bacterium RepID=K2DLK6_9BACT
Marine sediment metagenome DNA, contig: S01H1_L05381 {ECO:0000313|EMBL:GAF79799.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
peptidase M50
PLM3-1_170_b1_sep16_scaffold_4884_14

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9185..10573
DNA (1389bp) protein (463aa)
Uncharacterized protein {ECO:0000313|EMBL:KKM17021.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein bin=bin1_lowGC species=Methanosarcina mazei genus=Methanosarcina taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=bin1_lowGC organism_group=Unknown_CP
hypothetical protein
PLM3-1_170_b1_sep16_scaffold_4884_15
RLO_PLX_64_10, Bacteria

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10674..12089
DNA (1416bp) protein (472aa)
Uncharacterized protein Tax=Lyngbya sp. (strain PCC 8106) RepID=A0YSY3_LYNSP
Calx-beta domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM3-1_170_b1_sep16_scaffold_4884_16
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

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comp(12594..13493)
DNA (900bp) protein (300aa)
Uncharacterized protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Nitrolancetus hollandicus genus=Nitrolancetus taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_16_Chloroflexi_64_32_curated
PLM3-1_170_b1_sep16_scaffold_4884_17
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

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comp(13486..14409)
DNA (924bp) protein (308aa)
ABC transporter-like protein; K09687 antibiotic transport system ATP-binding protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
ABC transporter-like protein
Tax=RBG_16_Chloroflexi_64_32_curated
PLM3-1_170_b1_sep16_scaffold_4884_18
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

Not on your lists

comp(14487..15542)
DNA (1056bp) protein (352aa)
phospho-2-dehydro-3-deoxyheptonate aldolase (EC:2.5.1.54)
Phospho-2-dehydro-3-deoxyheptonate aldolase Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=B8G662_CHLAD
Tax=RBG_16_Chloroflexi_64_32_curated
PLM3-1_170_b1_sep16_scaffold_4884_19
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

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comp(15583..15954)
DNA (372bp) protein (124aa)
Chorismate mutase Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=B8G661_CHLAD
chorismate mutase
Tax=RBG_16_Chloroflexi_64_32_curated
PLM3-1_170_b1_sep16_scaffold_4884_20

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comp(15948..16589)
DNA (642bp) protein (214aa)
trpA; tryptophan synthase subunit alpha (EC:4.2.1.20)
Tryptophan synthase alpha chain Tax=Nitrolancetus hollandicus Lb RepID=I4EH71_9CHLR
Uncharacterized protein {ECO:0000313|EMBL:KKL59477.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM3-1_170_b1_sep16_scaffold_4884_21
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

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comp(16637..17023)
DNA (387bp) protein (129aa)
hypothetical protein Tax=Sulfobacillus thermosulfidooxidans RepID=UPI0002FA9F75
CAAX amino terminal protease family protein
Tax=RBG_16_Chloroflexi_64_32_curated
Displaying 21 items

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