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PLM3-1_170_b1_sep16_scaffold_7285

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b1_sep16_scaffold_7285_1
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

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120..977
DNA (858bp) protein (286aa)
Putative uncharacterized protein Tax=uncultured marine microorganism HF4000_APKG8C21 RepID=B3TA08_9ZZZZ
hypothetical protein
Tax=RBG_16_Chloroflexi_64_32_curated
PLM3-1_170_b1_sep16_scaffold_7285_2
unknown

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1046..2005
DNA (960bp) protein (320aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_7285_3
Ruegeria pomeroyi, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2013..3164)
DNA (1152bp) protein (384aa)
Collagen domain protein Tax=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) RepID=Q5LRX2_RUEPO
sdr; cell surface SD repeat-containing protein
Collagen domain protein {ECO:0000313|EMBL:AAV95274.2}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3); (Silicibacter pomeroyi).;"
PLM3-1_170_b1_sep16_scaffold_7285_4

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comp(3231..3839)
DNA (609bp) protein (203aa)
hypothetical protein Tax=Kribbella catacumbae RepID=UPI00036B3890
Uncharacterized protein {ECO:0000313|EMBL:KKL16527.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
ECF subfamily RNA polymerase sigma-24 factor
PLM3-1_170_b1_sep16_scaffold_7285_5

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3995..4564
DNA (570bp) protein (190aa)
dcd; deoxycytidine triphosphate deaminase (EC:3.5.4.13)
Uncharacterized protein {ECO:0000313|EMBL:KKL16528.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Deoxycytidine triphosphate deaminase bin=GWC2_Chloroflexi_73_18 species=Actinomyces urogenitalis genus=Actinomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
PLM3-1_170_b1_sep16_scaffold_7285_6
unknown

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4561..4680
DNA (120bp) protein (40aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_7285_7

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4673..5203
DNA (531bp) protein (177aa)
Uncharacterized protein Tax=Sorangium cellulosum So0157-2 RepID=S4XZ79_SORCE
Uncharacterized protein {ECO:0000313|EMBL:KKM21596.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
PLM3-1_170_b1_sep16_scaffold_7285_8
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

Not on your lists

comp(5230..5661)
DNA (432bp) protein (144aa)
Uncharacterized protein Tax=Gordonia amicalis NBRC 100051 = JCM 11271 RepID=L7KZ95_9ACTO
deazaflavin-dependent nitroreductase family protein
Tax=RBG_16_Chloroflexi_64_32_curated
PLM3-1_170_b1_sep16_scaffold_7285_9
Marinobacter nanhaiticus, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5729..6193
DNA (465bp) protein (155aa)
Uncharacterized protein Tax=Marinobacter nanhaiticus D15-8W RepID=N6WXM4_9ALTE
Uncharacterized protein {ECO:0000313|EMBL:ENO16346.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter nanhaiticus D15-8W.;"
hypothetical protein
PLM3-1_170_b1_sep16_scaffold_7285_10
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

Not on your lists

comp(6315..7397)
DNA (1083bp) protein (361aa)
hypothetical protein Tax=Saccharopolyspora spinosa RepID=UPI000237B0A4
hypothetical protein
Tax=RBG_16_Chloroflexi_64_32_curated
PLM3-1_170_b1_sep16_scaffold_7285_11
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

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comp(7502..8578)
DNA (1077bp) protein (359aa)
Adenylate/guanylate cyclase Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LV07_HALO1
adenylate/guanylate cyclase
Tax=RBG_16_Chloroflexi_68_14_curated
PLM3-1_170_b1_sep16_scaffold_7285_12
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

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comp(8604..8777)
DNA (174bp) protein (58aa)
response regulator receiver protein bin=bin1_lowGC species=Halomonas titanicae genus=Halomonas taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
Tax=RBG_16_Chloroflexi_68_14_curated
PLM3-1_170_b1_sep16_scaffold_7285_13
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

Not on your lists

comp(8781..9353)
DNA (573bp) protein (191aa)
lipJ; lignin peroxidase LipJ (EC:3.1.-.-)
response regulator receiver protein bin=bin1_lowGC species=Halomonas titanicae genus=Halomonas taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
Tax=RBG_16_Chloroflexi_68_14_curated
PLM3-1_170_b1_sep16_scaffold_7285_14
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

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comp(9350..9904)
DNA (555bp) protein (185aa)
Adenylate/guanylate cyclase/hydrolase, alpha/beta fold family Tax=Rhodobacteraceae bacterium KLH11 RepID=B9NM66_9RHOB
lysine decarboxylase transcriptional regulator CadC
Tax=RBG_16_Chloroflexi_64_32_curated
PLM3-1_170_b1_sep16_scaffold_7285_15
RBG_16_Actinobacteria_70_17_curated, Acidimicrobiia, Actinobacteria, Bacteria

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comp(10125..10589)
DNA (465bp) protein (155aa)
Secreted protein Tax=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) RepID=A6W8D9_KINRD
secreted protein
Tax=RBG_16_Actinobacteria_70_17_curated
Displaying 15 items

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