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PLM1_60_b1_redo_sep16_scaffold_1358

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_b1_redo_sep16_scaffold_1358_1

Not on your lists

comp(1..789)
DNA (789bp) protein (263aa)
Uncharacterized protein Tax=Actinomadura madurae LIID-AJ290 RepID=U2MXX7_9ACTO
Alpha/beta hydrolase fold-containing protein {ECO:0000313|EMBL:EQD68197.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hydrolase
PLM1_60_b1_redo_sep16_scaffold_1358_2
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(786..1151)
DNA (366bp) protein (122aa)
Uncharacterized protein Tax=Actinomadura madurae LIID-AJ290 RepID=U2P4V3_9ACTO
ArsR family transcriptional regulator {ECO:0000313|EMBL:KGG81903.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
Transcriptional repressor smtB
PLM1_60_b1_redo_sep16_scaffold_1358_3
Rhodococcus wratislaviensis, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(1630..2139)
DNA (510bp) protein (170aa)
Uncharacterized protein Tax=Rhodococcus wratislaviensis IFP 2016 RepID=L2TJ31_9NOCA
Uncharacterized protein {ECO:0000313|EMBL:ELB90338.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus wratislaviensis IFP 2016.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_1358_4
Rhodococcus opacus, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(2136..2438)
DNA (303bp) protein (101aa)
ArsR family transcriptional regulator Tax=Rhodococcus opacus RepID=UPI00029CC139
Transcriptional repressor sdpR
ArsR family transcriptional regulator {ECO:0000313|EMBL:AII09613.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus opacus (Nocardia opaca).;"
PLM1_60_b1_redo_sep16_scaffold_1358_5
Verrucosispora maris, Verrucosispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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comp(2443..2952)
DNA (510bp) protein (170aa)
Uncharacterized protein Tax=Verrucosispora maris (strain AB-18-032) RepID=F4FG06_VERMA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB42586.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Verrucosispora.;" source="Verrucosispora maris (strain AB-18-032).;"
PLM1_60_b1_redo_sep16_scaffold_1358_6
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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comp(3457..3729)
DNA (273bp) protein (91aa)
Uncharacterized protein {ECO:0000313|EMBL:ETK32922.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
PLM1_60_b1_redo_sep16_scaffold_1358_7
unknown

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comp(3843..4169)
DNA (327bp) protein (109aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_1358_8
Flavobacterium suncheonense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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4730..5104
DNA (375bp) protein (125aa)
hypothetical protein Tax=Lewinella cohaerens RepID=UPI00035E9380
Helix-turn-helix domain-containing protein
Histidine kinase {ECO:0000313|EMBL:KGO90139.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium suncheonense GH29-5 = DSM 17707.;"
PLM1_60_b1_redo_sep16_scaffold_1358_9
Actinoplanes sp. N902-109, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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5192..5536
DNA (345bp) protein (115aa)
Uncharacterized protein Tax=Actinoplanes sp. N902-109 RepID=R4LTQ7_9ACTO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGL18645.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes sp. N902-109.;"
PLM1_60_b1_redo_sep16_scaffold_1358_10
Dactylosporangium aurantiacum, Dactylosporangium, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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5897..6142
DNA (246bp) protein (82aa)
Putative uncharacterized protein Tax=Dactylosporangium aurantiacum subsp. hamdenensis RepID=E9LIM0_9ACTO
Putative uncharacterized protein {ECO:0000313|EMBL:ADU86025.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Dactylosporangium.;" source="Dactylosporangium aurantiacum subsp. hamdenensis.;"
PLM1_60_b1_redo_sep16_scaffold_1358_11
Mycobacterium parascrofulaceum, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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6380..7477
DNA (1098bp) protein (366aa)
Phage integrase SAM-like domain protein Tax=Mycobacterium parascrofulaceum ATCC BAA-614 RepID=D5P6R4_9MYCO
Phage integrase SAM-like domain protein {ECO:0000313|EMBL:EFG78237.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium parascrofulaceum ATCC BAA-614.;"
Tn554-related transposase A
PLM1_60_b1_redo_sep16_scaffold_1358_12
Mycobacterium nebraskense, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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7997..9739
DNA (1743bp) protein (581aa)
Integrase family protein Tax=Mycobacterium tusciae JS617 RepID=H1KA33_9MYCO
Transposase {ECO:0000313|EMBL:KKC01687.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium nebraskense.;"
Tn554-related transposase B
PLM1_60_b1_redo_sep16_scaffold_1358_13
Mycobacterium xenopi, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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9729..10217
DNA (489bp) protein (163aa)
Tn554 transposase C Tax=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) RepID=A1T710_MYCVP
Putative transposase domain protein {ECO:0000313|EMBL:EUA23981.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium xenopi 4042.;"
Tn554 transposase C
PLM1_60_b1_redo_sep16_scaffold_1358_14
Saccharothrix espanaensis, Saccharothrix, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(10210..11643)
DNA (1434bp) protein (478aa)
hypothetical protein Tax=Salinispora pacifica RepID=UPI00036CF58D
putative secreted protein
Putative secreted protein {ECO:0000313|EMBL:CCH30925.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharothrix.;" source="Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 /; NBRC 15066 / NRRL 15764).;"
PLM1_60_b1_redo_sep16_scaffold_1358_15
Actinoplanes friuliensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11904..12449
DNA (546bp) protein (182aa)
ECF subfamily RNA polymerase sigma-24 subunit Tax=Actinoplanes friuliensis DSM 7358 RepID=U5VSN4_9ACTO
ECF subfamily RNA polymerase sigma-24 subunit
ECF subfamily RNA polymerase sigma-24 subunit {ECO:0000313|EMBL:AGZ38725.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.;"
PLM1_60_b1_redo_sep16_scaffold_1358_16
unknown

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12433..13590
DNA (1158bp) protein (386aa)
hypothetical protein Tax=Salinispora pacifica RepID=UPI0003746A82
PLM1_60_b1_redo_sep16_scaffold_1358_17
Propionibacterium propionicum, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(14319..14804)
DNA (486bp) protein (162aa)
Uncharacterized protein Tax=Propionibacterium propionicum (strain F0230a) RepID=I6XTW4_PROPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFN47733.1}; species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Propionibacterium.;" source="Propionibacterium propionicum (strain F0230a).;"
PLM1_60_b1_redo_sep16_scaffold_1358_18
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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15043..16374
DNA (1332bp) protein (444aa)
Serine (Or cysteine) proteinase inhibitor, clade B (Ovalbumin), member Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2BC83_STRRD
serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member
Serine (Or cysteine) proteinase inhibitor, clade B (Ovalbumin), member {ECO:0000313|EMBL:ACZ89912.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
PLM1_60_b1_redo_sep16_scaffold_1358_19
unknown

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16420..16650
DNA (231bp) protein (77aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_1358_20
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16534..17352)
DNA (819bp) protein (273aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|SAAS:SAAS00018107}; EC=1.17.1.8 {ECO:0000256|SAAS:SAAS00018107};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
dihydrodipicolinate reductase (EC:1.3.1.26)
hypothetical protein Tax=Kribbella catacumbae RepID=UPI000372D138
PLM1_60_b1_redo_sep16_scaffold_1358_21
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

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17467..18168
DNA (702bp) protein (234aa)
Uncharacterized protein Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2SBH0_GEOOG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB74118.1}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;"
Displaying 21 items

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