ggKbase home page

PLM1_60_b1_sep16_Acidothermus_cellulolyticus_70_16

PLM1_60cm_b1_redo_sep2016_Actinobacteria_70_16
In projects: PLM1_60cm_b1_redo_sep2016  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p

Consensus taxonomy: Actinobacteria  →  Actinobacteria  →  Bacteria

Displaying items 401-450 of 489 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM1_60_b1_redo_sep16_scaffold_40299
Genus: Rhodococcus (50%)
4 2738 bp 67.75 15.45 75.82
PLM1_60_b1_redo_sep16_scaffold_22058
Class: Actinobacteria (72.73%)
11 8727 bp 68.47 16.35 75.80
PLM1_60_b1_redo_sep16_scaffold_4395
Class: Actinobacteria (53.85%)
13 9368 bp 70.23 11.64 75.74
PLM1_60_b1_redo_sep16_scaffold_1972
Class: Actinobacteria (100%)
16 15031 bp 69.50 14.90 75.70
PLM1_60_b1_redo_sep16_scaffold_4566
Domain: Bacteria (66.67%)
9 9141 bp 67.96 13.11 75.39
PLM1_60_b1_redo_sep16_scaffold_30748
Order: Corynebacteriales (66.67%)
3 3164 bp 63.12 12.56 75.38
PLM1_60_b1_redo_sep16_scaffold_4357
Class: Actinobacteria (77.78%)
9 9420 bp 67.37 18.57 75.35
PLM1_60_b1_redo_sep16_scaffold_28386 6 3436 bp 69.03 15.72 75.20
PLM1_60_b1_redo_sep16_scaffold_16110
Class: Actinobacteria (100%)
4 4483 bp 67.12 12.78 75.15
PLM1_60_b1_redo_sep16_scaffold_19853
Class: Actinobacteria (50%)
6 4004 bp 68.53 12.81 75.15
PLM1_60_b1_redo_sep16_scaffold_30483
Domain: Bacteria (66.67%)
3 3179 bp 67.85 21.61 74.83
PLM1_60_b1_redo_sep16_scaffold_11552
Class: Actinobacteria (57.14%)
7 5410 bp 68.60 16.22 74.64
PLM1_60_b1_redo_sep16_scaffold_5841
Domain: Bacteria (60%)
10 7929 bp 70.83 13.47 74.62
PLM1_60_b1_redo_sep16_scaffold_12491
Class: Actinobacteria (83.33%)
6 5171 bp 66.25 11.26 74.61
PLM1_60_b1_redo_sep16_scaffold_4780
Class: Actinobacteria (80%)
10 8909 bp 69.41 15.25 74.18
PLM1_60_b1_redo_sep16_scaffold_761
Class: Actinobacteria (73.33%)
15 24758 bp 67.82 12.23 73.89
PLM1_60_b1_redo_sep16_scaffold_3472
Class: Actinobacteria (81.82%)
11 10822 bp 69.56 19.31 73.88
PLM1_60_b1_redo_sep16_scaffold_1789
Class: Actinobacteria (70.59%)
17 15809 bp 68.08 13.80 73.76
PLM1_60_b1_redo_sep16_scaffold_23919
Order: Micromonosporales (66.67%)
3 3621 bp 69.32 16.11 73.74
PLM1_60_b1_redo_sep16_scaffold_4948
Class: Actinobacteria (66.67%)
12 8734 bp 66.81 11.59 73.61
PLM1_60_b1_redo_sep16_scaffold_3969
Class: Actinobacteria (58.33%)
12 9957 bp 71.06 14.54 73.31
PLM1_60_b1_redo_sep16_scaffold_3724
Class: Actinobacteria (61.11%)
18 12821 bp 66.87 9.73 73.22
PLM1_60_b1_redo_sep16_scaffold_18427
Phylum: Actinobacteria (66.67%)
9 5235 bp 70.39 12.18 73.18
PLM1_60_b1_redo_sep16_scaffold_2612
Class: Actinobacteria (70%)
10 12772 bp 70.65 15.40 73.05
PLM1_60_b1_redo_sep16_scaffold_10059
Class: Actinobacteria (62.5%)
16 17906 bp 70.74 17.77 73.03
PLM1_60_b1_redo_sep16_scaffold_12733
Class: Actinobacteria (100%)
7 5111 bp 68.48 12.74 72.96
PLM1_60_b1_redo_sep16_scaffold_4633
Class: Actinobacteria (75%)
8 9064 bp 68.92 15.59 72.75
PLM1_60_b1_redo_sep16_scaffold_3462
Class: Actinobacteria (71.43%)
14 10835 bp 66.51 11.95 72.68
PLM1_60_b1_redo_sep16_scaffold_4473
Domain: Bacteria (75%)
8 9260 bp 69.47 16.54 72.67
PLM1_60_b1_redo_sep16_scaffold_2000
Class: Actinobacteria (68.75%)
16 14906 bp 69.80 9.82 72.62
PLM1_60_b1_redo_sep16_scaffold_7055
Class: Actinobacteria (88.89%)
9 7531 bp 69.46 12.23 72.50
PLM1_60_b1_redo_sep16_scaffold_14124
Class: Actinobacteria (100%)
6 4824 bp 68.74 15.95 72.45
PLM1_60_b1_redo_sep16_scaffold_1163
Class: Actinobacteria (56.67%)
30 22823 bp 67.69 16.69 72.32
PLM1_60_b1_redo_sep16_scaffold_4022
Class: Actinobacteria (66.67%)
12 9880 bp 68.52 15.80 72.00
PLM1_60_b1_redo_sep16_scaffold_11692
Class: Actinobacteria (75%)
4 6106 bp 64.87 12.87 71.63
PLM1_60_b1_redo_sep16_scaffold_1582
Class: Actinobacteria (83.33%)
18 16946 bp 70.60 11.97 71.42
PLM1_60_b1_redo_sep16_scaffold_13069
Class: Actinobacteria (85.71%)
7 5035 bp 68.26 18.14 70.96
PLM1_60_b1_redo_sep16_scaffold_45407
Species: Propionibacterium propionicum (50%)
2 2568 bp 63.28 15.95 70.91
PLM1_60_b1_redo_sep16_scaffold_4155
Class: Actinobacteria (100%)
9 9698 bp 68.65 11.51 70.84
PLM1_60_b1_redo_sep16_scaffold_12583
Class: Actinobacteria (66.67%)
9 5148 bp 67.91 15.97 70.80
PLM1_60_b1_redo_sep16_scaffold_2430
Class: Actinobacteria (76.47%)
17 13355 bp 68.73 12.61 70.58
PLM1_60_b1_redo_sep16_scaffold_13239
Genus: Rhodococcus (60%)
5 4999 bp 68.03 9.99 70.15
PLM1_60_b1_redo_sep16_scaffold_1948
Class: Actinobacteria (61.54%)
13 15143 bp 70.98 15.46 69.95
PLM1_60_b1_redo_sep16_scaffold_581
Class: Actinobacteria (57.14%)
21 28844 bp 69.76 16.23 69.73
PLM1_60_b1_redo_sep16_scaffold_2251
Class: Actinobacteria (83.33%)
12 13887 bp 70.00 16.77 69.58
PLM1_60_b1_redo_sep16_scaffold_11778
Class: Actinobacteria (77.78%)
9 5689 bp 68.10 15.37 69.56
PLM1_60_b1_redo_sep16_scaffold_2417
Class: Actinobacteria (60%)
15 13399 bp 71.52 16.00 69.48
PLM1_60_b1_redo_sep16_scaffold_5394
Class: Actinobacteria (81.82%)
11 8305 bp 69.75 12.34 69.36
PLM1_60_b1_redo_sep16_scaffold_15338
Class: Actinobacteria (60%)
5 4612 bp 68.45 19.09 69.34
PLM1_60_b1_redo_sep16_scaffold_31855
Class: Actinobacteria (80%)
5 3530 bp 68.58 18.57 69.26
Displaying items 401-450 of 489 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.