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PLM1_60_b1_sep16_Acidothermus_cellulolyticus_70_16

PLM1_60cm_b1_redo_sep2016_Actinobacteria_70_16
In projects: PLM1_60cm_b1_redo_sep2016  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p

Consensus taxonomy: Actinobacteria  →  Actinobacteria  →  Bacteria

Displaying items 351-400 of 489 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM1_60_b1_redo_sep16_scaffold_12394
Class: Actinobacteria (62.5%)
8 9532 bp 69.16 11.17 80.44
PLM1_60_b1_redo_sep16_scaffold_4187
Genus: Streptomyces (50%)
8 9635 bp 68.94 12.95 80.36
PLM1_60_b1_redo_sep16_scaffold_770
Class: Actinobacteria (51.61%)
31 24581 bp 68.83 11.98 80.35
PLM1_60_b1_redo_sep16_scaffold_3814
Class: Actinobacteria (75%)
8 10201 bp 69.18 13.06 80.32
PLM1_60_b1_redo_sep16_scaffold_5361
Class: Actinobacteria (66.67%)
6 8340 bp 70.20 12.93 80.29
PLM1_60_b1_redo_sep16_scaffold_5438
Class: Actinobacteria (66.67%)
9 8263 bp 68.27 14.32 80.09
PLM1_60_b1_redo_sep16_scaffold_7431
Class: Actinobacteria (53.85%)
13 6933 bp 68.09 14.67 80.05
PLM1_60_b1_redo_sep16_scaffold_3671
Class: Actinobacteria (64.29%)
14 12691 bp 68.83 13.78 80.04
PLM1_60_b1_redo_sep16_scaffold_398
Domain: Bacteria (59.26%)
27 34589 bp 66.02 12.92 79.94
PLM1_60_b1_redo_sep16_scaffold_201
Class: Actinobacteria (75%)
48 45864 bp 71.34 16.33 79.87
PLM1_60_b1_redo_sep16_scaffold_5172
Class: Actinobacteria (60%)
10 8504 bp 70.95 16.44 79.87
PLM1_60_b1_redo_sep16_scaffold_3052
Class: Actinobacteria (81.25%)
16 13831 bp 70.49 14.21 79.82
PLM1_60_b1_redo_sep16_scaffold_4616
Class: Actinobacteria (81.82%)
11 9086 bp 72.45 9.15 79.80
PLM1_60_b1_redo_sep16_scaffold_27088
Order: Pseudonocardiales (66.67%)
3 3387 bp 69.50 12.53 79.63
PLM1_60_b1_redo_sep16_scaffold_4471
Class: Actinobacteria (78.57%)
14 11512 bp 71.87 14.74 79.38
PLM1_60_b1_redo_sep16_scaffold_18763 7 4124 bp 69.50 15.46 79.29
PLM1_60_b1_redo_sep16_scaffold_6597
Genus: Streptomyces (50%)
8 8302 bp 71.28 18.52 79.25
PLM1_60_b1_redo_sep16_scaffold_2115
Class: Actinobacteria (68.75%)
16 14308 bp 69.63 17.11 79.13
PLM1_60_b1_redo_sep16_scaffold_671
Class: Actinobacteria (66.67%)
27 26693 bp 67.67 11.86 79.05
PLM1_60_b1_redo_sep16_scaffold_3842
Class: Actinobacteria (63.64%)
22 19788 bp 67.22 12.29 78.97
PLM1_60_b1_redo_sep16_scaffold_7364
Class: Actinobacteria (100%)
7 6967 bp 73.65 15.14 78.76
PLM1_60_b1_redo_sep16_scaffold_4529
Class: Actinobacteria (81.82%)
11 11246 bp 67.47 11.82 78.72
PLM1_60_b1_redo_sep16_scaffold_2047
Class: Actinobacteria (75%)
12 14665 bp 68.56 16.83 78.70
PLM1_60_b1_redo_sep16_scaffold_2120 26 14293 bp 64.95 12.83 78.58
PLM1_60_b1_redo_sep16_scaffold_13980
Domain: Bacteria (60%)
5 4851 bp 68.79 19.14 78.54
PLM1_60_b1_redo_sep16_scaffold_6379
Class: Actinobacteria (100%)
6 7567 bp 68.15 14.09 78.54
PLM1_60_b1_redo_sep16_scaffold_9900
Class: Actinobacteria (100%)
3 5879 bp 68.87 9.75 78.53
PLM1_60_b1_redo_sep16_scaffold_1014
Class: Actinobacteria (78.57%)
14 28474 bp 67.10 13.11 78.48
PLM1_60_b1_redo_sep16_scaffold_10655
Order: Micromonosporales (55.56%)
9 5935 bp 68.90 16.53 78.30
PLM1_60_b1_redo_sep16_scaffold_5771
Class: Actinobacteria (68.75%)
16 12596 bp 68.16 17.37 78.24
PLM1_60_b1_redo_sep16_scaffold_2277 20 14670 bp 63.46 14.62 78.08
PLM1_60_b1_redo_sep16_scaffold_7689
Class: Actinobacteria (75%)
8 6800 bp 69.19 14.56 78.04
PLM1_60_b1_redo_sep16_scaffold_3738
Class: Actinobacteria (70%)
10 10355 bp 67.42 12.18 77.82
PLM1_60_b1_redo_sep16_scaffold_11120
Order: Micrococcales (50%)
6 5523 bp 70.34 18.12 77.78
PLM1_60_b1_redo_sep16_scaffold_6030
Class: Actinobacteria (60%)
20 14931 bp 68.96 12.37 77.72
PLM1_60_b1_redo_sep16_scaffold_2032
Class: Actinobacteria (60%)
15 14753 bp 69.71 12.81 77.37
PLM1_60_b1_redo_sep16_scaffold_1384
Class: Actinobacteria (86.67%)
30 28900 bp 68.00 16.77 77.28
PLM1_60_b1_redo_sep16_scaffold_9466
Order: Streptomycetales (50%)
6 6029 bp 66.46 17.39 77.23
PLM1_60_b1_redo_sep16_scaffold_4069
Domain: Bacteria (53.85%)
13 9814 bp 69.15 14.50 77.16
PLM1_60_b1_redo_sep16_scaffold_7508
Class: Actinobacteria (87.5%)
8 6891 bp 69.50 17.52 77.10
PLM1_60_b1_redo_sep16_scaffold_1358
Class: Actinobacteria (66.67%)
21 18284 bp 68.75 14.56 77.02
PLM1_60_b1_redo_sep16_scaffold_10455
Class: Actinobacteria (75%)
8 5708 bp 69.20 16.37 77.00
PLM1_60_b1_redo_sep16_scaffold_5725
Class: Actinobacteria (75%)
8 8020 bp 65.25 14.21 76.72
PLM1_60_b1_redo_sep16_scaffold_6724
Class: Actinobacteria (71.43%)
7 7358 bp 71.94 13.07 76.61
PLM1_60_b1_redo_sep16_scaffold_34604
Genus: Streptomyces (50%)
6 2970 bp 68.62 12.37 76.57
PLM1_60_b1_redo_sep16_scaffold_15585
Species: Cryptosporangium arvum (100%)
5 4569 bp 68.15 16.15 76.56
PLM1_60_b1_redo_sep16_scaffold_24288
Class: Actinobacteria (50%)
6 4680 bp 70.83 17.88 76.54
PLM1_60_b1_redo_sep16_scaffold_2635
Class: Actinobacteria (73.33%)
15 12703 bp 67.76 12.74 76.45
PLM1_60_b1_redo_sep16_scaffold_5898
Class: Actinobacteria (66.67%)
6 7882 bp 68.13 12.86 76.28
PLM1_60_b1_redo_sep16_scaffold_1268
Class: Actinobacteria (73.91%)
23 18927 bp 70.17 11.76 75.94
Displaying items 351-400 of 489 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.