ggKbase home page

PLM4_90_coex_sep16_scaffold_357

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_90_coex_sep16_scaffold_357_1
RBG_16_Deltaproteobacteria_54_18_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..1075
DNA (1074bp) protein (358aa)
Fe-S oxidoreductase bin=GWF2_OP3_43_52 species=Methanopyrus kandleri genus=Methanopyrus taxon_order=Methanopyrales taxon_class=Methanopyri phylum=Euryarchaeota tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
methyltransferase
Tax=RBG_16_Deltaproteobacteria_54_18_curated
PLM4_90_coex_sep16_scaffold_357_2
RBG_16_Deltaproteobacteria_54_18_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1115..2005
DNA (891bp) protein (297aa)
Amidohydrolase family bin=GWF2_OP3_43_52 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
amidohydrolase 2
Tax=RBG_16_Deltaproteobacteria_54_18_curated
PLM4_90_coex_sep16_scaffold_357_3
RBG_16_Deltaproteobacteria_54_18_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2008..2757
DNA (750bp) protein (250aa)
Uridine phosphorylase bin=GWF2_OP3_43_52 species=Clostridium sp. D5 genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
purine or other phosphorylase family 1
Tax=RBG_16_Deltaproteobacteria_54_18_curated
PLM4_90_coex_sep16_scaffold_357_4
RBG_16_Deltaproteobacteria_54_18_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2754..3188
DNA (435bp) protein (145aa)
Tax=RBG_16_Deltaproteobacteria_54_18_curated
PLM4_90_coex_sep16_scaffold_357_5
RBG_16_Deltaproteobacteria_54_18_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3188..3751
DNA (564bp) protein (188aa)
Methylthioribose-1-phosphate isomerase bin=GWF2_OP3_43_52 species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
Tax=RBG_16_Deltaproteobacteria_54_18_curated
PLM4_90_coex_sep16_scaffold_357_6
RBG_16_Deltaproteobacteria_54_18_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3751..4071
DNA (321bp) protein (107aa)
mtnA; S-methyl-5-thioribose-1-phosphate isomerase (EC:5.3.1.23)
Methylthioribose-1-phosphate isomerase bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Desulforudis audaxviator genus=Candidatus Desulforudis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RBG_16_Deltaproteobacteria_54_18_curated
PLM4_90_coex_sep16_scaffold_357_7
RBG_16_Deltaproteobacteria_54_18_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4062..4532
DNA (471bp) protein (157aa)
Tax=RBG_16_Deltaproteobacteria_54_18_curated
PLM4_90_coex_sep16_scaffold_357_8
RBG_16_Deltaproteobacteria_54_18_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4529..5512
DNA (984bp) protein (328aa)
Class II aldolase/adducin family protein bin=GWF2_OP3_38_59 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_OP3_38_59 organism_group=OP3 (Omnitrophica) organism_desc=a159
class II aldolase/adducin-like protein
Tax=RBG_16_Deltaproteobacteria_54_18_curated
PLM4_90_coex_sep16_scaffold_357_9
RBG_16_Deltaproteobacteria_54_18_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5512..6939
DNA (1428bp) protein (476aa)
Betaine aldehyde dehydrogenase bin=GWF2_OP3_43_52 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
aldehyde dehydrogenase
Tax=RBG_16_Deltaproteobacteria_54_18_curated
PLM4_90_coex_sep16_scaffold_357_10
RBG_16_Deltaproteobacteria_54_18_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7019..7723)
DNA (705bp) protein (235aa)
Hypothetical conserved protein Tax=uncultured Acidobacteria bacterium RepID=H5SFD8_9BACT
hypothetical protein
Tax=RBG_16_Deltaproteobacteria_54_18_curated
PLM4_90_coex_sep16_scaffold_357_11
RBG_16_Deltaproteobacteria_54_18_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7838..8497)
DNA (660bp) protein (220aa)
dedA family protein; K03975 membrane-associated protein bin=bin1_lowGC species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
dedA family protein
Tax=RBG_16_Deltaproteobacteria_54_18_curated
PLM4_90_coex_sep16_scaffold_357_12
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8504..8647)
DNA (144bp) protein (48aa)
Tax=RBG_13_Deltaproteobacteria_53_10_curated
PLM4_90_coex_sep16_scaffold_357_13
RBG_16_Deltaproteobacteria_54_18_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9208..10410)
DNA (1203bp) protein (401aa)
Nramp family metal ion transport protein bin=GWC2_Syntrophus__56_31 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
manganese transporter NRAMP
Tax=RBG_16_Deltaproteobacteria_54_18_curated
PLM4_90_coex_sep16_scaffold_357_14
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10488..11750)
DNA (1263bp) protein (421aa)
Mg/Co/Ni transporter MgtE domain protein bin=GWC2_Syntrophobacterales_56_13 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
Mg2+/Co2+ transporter
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_coex_sep16_scaffold_357_15
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12097..12603)
DNA (507bp) protein (169aa)
Isochorismatase hydrolase Tax=Desulfatibacillum alkenivorans (strain AK-01) RepID=B8FKY2_DESAA
isochorismatase hydrolase
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_coex_sep16_scaffold_357_16
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12973..13404)
DNA (432bp) protein (144aa)
Phosphotyrosine protein phosphatase Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LTF6_SYNAS
phosphotyrosine protein phosphatase
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_coex_sep16_scaffold_357_17
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13514..14203)
DNA (690bp) protein (230aa)
PhoU family transcriptional regulator Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B7A572
phoU; phosphate transport system protein PhoU
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_coex_sep16_scaffold_357_18
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14222..14983)
DNA (762bp) protein (254aa)
ABC transporter related Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KRG8_CLOPH
ABC transporter
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_coex_sep16_scaffold_357_19
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14993..15832)
DNA (840bp) protein (280aa)
hypothetical protein bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
phosphate ABC transporter, inner membrane subunit PstA
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_coex_sep16_scaffold_357_20
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15832..16686)
DNA (855bp) protein (285aa)
Phosphate ABC transporter, inner membrane subunit PstC Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KRG6_CLOPH
phosphate ABC transporter, inner membrane subunit PstC
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_coex_sep16_scaffold_357_21
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16683..17513)
DNA (831bp) protein (277aa)
Phosphate binding protein Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KRG5_CLOPH
phosphate binding protein
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_coex_sep16_scaffold_357_22
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17565..18335)
DNA (771bp) protein (257aa)
Phosphate ABC transporter, ATPase subunit Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9RD19_AMMDK
phosphate ABC transporter ATPase
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_coex_sep16_scaffold_357_23
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18696..19289)
DNA (594bp) protein (198aa)
Electron transfer flavoprotein alpha-subunit bin=GWC2_Syntrophus__56_31 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
electron transfer flavoprotein alpha-subunit
Tax=RBG_13_Deltaproteobacteria_52_11_curated
Displaying 23 items

View Taxonomy