ggKbase home page

PLM4_5_b1_sep16_scaffold_657

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_657_1
unknown

Not on your lists

3..152
DNA (150bp) protein (50aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_657_2
Desulfatitalea sp. BRH_c12, Desulfatitalea, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

167..1126
DNA (960bp) protein (320aa)
hypothetical protein Tax=Vibrio splendidus RepID=UPI000301E2E5
Uncharacterized protein {ECO:0000313|EMBL:KJS29128.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfatitalea.;" source="Desulfatitalea sp. BRH_c12.;"
hypothetical protein
PLM4_5_b1_sep16_scaffold_657_3
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1158..2414)
DNA (1257bp) protein (419aa)
aspartate kinase (EC:2.7.2.4)
aspartate kinase Tax=Herbaspirillum sp. JC206 RepID=UPI00036938BB
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
PLM4_5_b1_sep16_scaffold_657_trna_1
unknown

Not on your lists

comp(2471..2557)
DNA (87bp)
transferRNA Ser
PLM4_5_b1_sep16_scaffold_657_4
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2666..3397
DNA (732bp) protein (244aa)
Uncharacterized protein Tax=Sulfuricella denitrificans skB26 RepID=S6A9X9_9PROT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_5_b1_sep16_scaffold_657_5
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3668..4663
DNA (996bp) protein (332aa)
Putative uncharacterized protein Tax=Bradyrhizobium sp. WSM471 RepID=H5Y9D8_9BRAD
Putative uncharacterized protein {ECO:0000313|EMBL:EHR04221.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
hypothetical protein
PLM4_5_b1_sep16_scaffold_657_6
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4700..5983)
DNA (1284bp) protein (428aa)
rumA; 23S rRNA (uracil-5-)-methyltransferase RumA (EC:2.1.1.-)
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=RLMD_THIDA
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM4_5_b1_sep16_scaffold_657_7
R_Betaproteobacteria_67_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5971..6747)
DNA (777bp) protein (259aa)
Propable PolB Tax=Thauera sp. 63 RepID=N6X7F3_9RHOO
3'-5' exonuclease
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_19_curated
PLM4_5_b1_sep16_scaffold_657_8
R_Betaproteobacteria_67_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6744..7643)
DNA (900bp) protein (300aa)
Cysteine synthase B Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QHX4_AZOSU
cysteine synthase B
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_19_curated
PLM4_5_b1_sep16_scaffold_657_9
R_Betaproteobacteria_67_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7640..8623)
DNA (984bp) protein (328aa)
ADP-L-glycero-D-manno-heptose-6-epimerase Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QHX3_AZOSU
ADP-L-glycero-D-manno-heptose-6-epimerase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_19_curated
PLM4_5_b1_sep16_scaffold_657_10
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8620..9549)
DNA (930bp) protein (310aa)
RfaE bifunctional protein Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CTX1_SIDLE
D-heptose-7-phosphate 1-kinase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_5_b1_sep16_scaffold_657_11
R_Betaproteobacteria_67_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9546..10871)
DNA (1326bp) protein (442aa)
UDP-glucose dehydrogenase (EC:1.1.1.22); K00012 UDPglucose 6-dehydrogenase [EC:1.1.1.22] bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
nucleotide sugar dehydrogenase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_19_curated
PLM4_5_b1_sep16_scaffold_657_12
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10868..12046)
DNA (1179bp) protein (393aa)
Putative N-acetylglucosaminyl transferase Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QHW6_AZOSU
putative N-acetylglucosaminyl transferase
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM4_5_b1_sep16_scaffold_657_13
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12046..12348)
DNA (303bp) protein (101aa)
Uncharacterized integral membrane protein Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QHW5_AZOSU
hypothetical protein
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM4_5_b1_sep16_scaffold_657_14
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12376..12693)
DNA (318bp) protein (106aa)
Integration host factor subunit beta Tax=Thauera terpenica 58Eu RepID=T0ALG5_9RHOO
ihfB; integration host factor subunit beta
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_5_b1_sep16_scaffold_657_15
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(12731..14473)
DNA (1743bp) protein (581aa)
30S ribosomal protein S1 Tax=Methyloversatilis sp. NVD RepID=UPI00035EED61
rpsA; 30S ribosomal protein S1
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM4_5_b1_sep16_scaffold_657_16
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14548..15195)
DNA (648bp) protein (216aa)
cytidylate kinase Tax=Methyloversatilis universalis RepID=UPI0003630584
cytidylate kinase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM4_5_b1_sep16_scaffold_657_17
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15192..16415)
DNA (1224bp) protein (408aa)
3-phosphoshikimate 1-carboxyvinyltransferase Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6Z6G1_9RHOO
aroO; bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM4_5_b1_sep16_scaffold_657_18
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16412..17275)
DNA (864bp) protein (288aa)
Prephenate dehydrogenase Tax=Herbaspirillum frisingense GSF30 RepID=R0EJM0_9BURK
prephenate dehydrogenase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
PLM4_5_b1_sep16_scaffold_657_19
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17272..18381)
DNA (1110bp) protein (370aa)
Histidinol-phosphate aminotransferase Tax=Thauera sp. 63 RepID=N6XE67_9RHOO
histidinol-phosphate aminotransferase
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM4_5_b1_sep16_scaffold_657_20
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18397..19473)
DNA (1077bp) protein (359aa)
pheA; chorismate mutase/prephenate dehydratase (EC:5.4.99.5)
Chorismate mutase Tax=Thauera phenylacetica B4P RepID=N6ZSK1_9RHOO
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_19_curated
PLM4_5_b1_sep16_scaffold_657_21
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19470..19679)
DNA (210bp) protein (70aa)
D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95); K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95] bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95)
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
Displaying 22 items

View Taxonomy