ggKbase home page

PLM4_5_b1_sep16_scaffold_1108

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_1108_1
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

1..1647
DNA (1647bp) protein (549aa)
gamma-glutamyltransferase (EC:2.3.2.2); K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Serratia sp. DD3 genus=Serratia taxon_order=Enterobacteriales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
gamma-glutamyltranspeptidase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM4_5_b1_sep16_scaffold_1108_2
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1644..2924)
DNA (1281bp) protein (427aa)
Major facilitator transporter bin=GWE1_Burkholderiales_65_30 species=unknown genus=Pusillimonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
major facilitator transporter
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
PLM4_5_b1_sep16_scaffold_1108_3
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2979..3923)
DNA (945bp) protein (315aa)
hypothetical protein Tax=Massilia niastensis RepID=UPI00036FCAFE
Tricarboxylate transport protein TctC
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM4_5_b1_sep16_scaffold_1108_4
Cupriavidus sp. SK-4, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3984..4961)
DNA (978bp) protein (326aa)
Extra-cytoplasmic solute receptor Tax=Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) RepID=F8GRN0_CUPNN
ABC transporter substrate-binding protein {ECO:0000313|EMBL:EYS91427.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-4.;"
DHA2 family major facilitator superfamily protein
PLM4_5_b1_sep16_scaffold_1108_5
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5122..6150
DNA (1029bp) protein (343aa)
Putative TIM-barrel fold metal-dependent hydrolase bin=GWC2_Methylomirabilis_70_16 species=Pseudomonas sp. GM67 genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
amidohydrolase 2
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
PLM4_5_b1_sep16_scaffold_1108_6
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6169..7542
DNA (1374bp) protein (458aa)
endoribonuclease Tax=Burkholderia oklahomensis RepID=UPI00016A7216
endoribonuclease L-PSP family protein
Endoribonuclease L-PSP family protein {ECO:0000313|EMBL:KGS04143.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei ABCPW 111.;"
PLM4_5_b1_sep16_scaffold_1108_7
unknown

Not on your lists

7539..8945
DNA (1407bp) protein (469aa)
hypothetical protein bin=GWA2_Ignavibacteria_55_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
PLM4_5_b1_sep16_scaffold_1108_8
Nocardia brasiliensis, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8962..9408
DNA (447bp) protein (149aa)
Endoribonuclease L-PSP bin=GWA2_Ignavibacteria_55_11 species=Saccharothrix espanaensis genus=Saccharothrix taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
Putative endoribonuclease {ECO:0000313|EMBL:GAJ86274.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia brasiliensis NBRC 14402.;"
endoribonuclease L-PSP
PLM4_5_b1_sep16_scaffold_1108_9
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9444..10445
DNA (1002bp) protein (334aa)
Extra-cytoplasmic solute receptor bin=GWA2_Ignavibacteria_55_11 species=unknown genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM4_5_b1_sep16_scaffold_1108_10
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10455..11738
DNA (1284bp) protein (428aa)
Endoribonuclease L-PSP Tax=Aminobacterium colombiense (strain DSM 12261 / ALA-1) RepID=D5EFT3_AMICL
Uncharacterized protein {ECO:0000313|EMBL:ETX08854.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
endoribonuclease L-PSP
PLM4_5_b1_sep16_scaffold_1108_11
Streptomyces sp. CNQ-509, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11747..12136)
DNA (390bp) protein (130aa)
Uncharacterized protein Tax=Streptomyces sp. HPH0547 RepID=S3AVP5_9ACTO
Endoribonuclease L-PSP {ECO:0000313|EMBL:AKH85225.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. CNQ-509.;"
endoribonuclease L-PSP
PLM4_5_b1_sep16_scaffold_1108_12
Streptomyces sp. CNQ-509, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12145..12531)
DNA (387bp) protein (129aa)
hypothetical protein Tax=Streptomyces RepID=UPI0003665FA1
Endoribonuclease L-PSP {ECO:0000313|EMBL:AKH85225.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. CNQ-509.;"
3-hydroxyisobutyrate dehydrogenase
PLM4_5_b1_sep16_scaffold_1108_13
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12584..13435
DNA (852bp) protein (284aa)
Amidase-like protein Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y6G3_RAMTT
amidase
Amidase-like protein {ECO:0000313|EMBL:AEG94037.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
Displaying 13 items

View Taxonomy