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PLM4_5_b1_sep16_scaffold_1150

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_1150_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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3..170
DNA (168bp) protein (56aa)
hypothetical protein; K09122 hypothetical protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1150_2
unknown

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186..578
DNA (393bp) protein (131aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_1150_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(597..1139)
DNA (543bp) protein (181aa)
id=5223754 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1150_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(1159..2646)
DNA (1488bp) protein (496aa)
Integral membrane sensor signal transduction histidine kinase Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1AUC4_PELPD bin=16ft_combo_ws3_JS1 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
sensor histidine kinase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1150_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(2643..4109)
DNA (1467bp) protein (489aa)
Sigma-54 dependent transcriptional regulator Tax=Cystobacter fuscus DSM 2262 RepID=L9K770_9DELT bin=16ft_combo_ws3_JS1 species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
atoC; mutant NtrC-like activator
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1150_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

4545..5402
DNA (858bp) protein (286aa)
Predicted glycosyltransferases bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
glycosyl transferase family protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1150_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

5411..6463
DNA (1053bp) protein (351aa)
Glycosyl transferase, family 4 Tax=Desulforudis audaxviator (strain MP104C) RepID=B1I6B4_DESAP bin=16ft_combo_ws3_JS1 species=Candidatus Desulforudis audaxviator genus=Candidatus Desulforudis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
glycosyl transferase family protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1150_8
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6579..7367)
DNA (789bp) protein (263aa)
Putative RNA-binding protein Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WJS3_9BURK
Putative RNA-binding protein {ECO:0000313|EMBL:EHR70631.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
TolA
PLM4_5_b1_sep16_scaffold_1150_9
unknown

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7584..8114
DNA (531bp) protein (177aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_1150_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

8111..9367
DNA (1257bp) protein (419aa)
Predicted Acetyltransferase, GNAT family Tax=Sorangium cellulosum (strain So ce56) RepID=A9F6R7_SORC5 bin=16ft_combo_ws3_JS1 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
GNAT family acetyltransferase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1150_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

9387..9818
DNA (432bp) protein (144aa)
thioesterase bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
thioesterase superfamily protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1150_12
RBG_19FT_COMBO_Zixibacteria_42_43_curated, Zixibacteria, Bacteria

Not on your lists

9830..10993
DNA (1164bp) protein (388aa)
serine phosphatase bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
serine phosphatase
Tax=RBG_19FT_COMBO_Zixibacteria_42_43_curated
PLM4_5_b1_sep16_scaffold_1150_13
unknown

Not on your lists

11032..11346
DNA (315bp) protein (105aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_1150_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

11343..12737
DNA (1395bp) protein (465aa)
amidase; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
amidase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1150_15
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(12738..13109)
DNA (372bp) protein (124aa)
Abortive infection protein Tax=Halorubrum saccharovorum DSM 1137 RepID=M0DRT4_9EURY
abortive infection protein
Tax=RBG_16_Gemmatimonadetes_66_8_curated
Displaying 15 items

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