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PLM4_5_b1_sep16_scaffold_1546

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_1546_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


3..245
DNA (243bp) protein (81aa)
rpsJ; Ribosomal protein S10; K02946 small subunit ribosomal protein S10 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
rpsJ; 30S ribosomal protein S10
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1546_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


242..865
DNA (624bp) protein (208aa)
50S ribosomal protein L3; K02906 large subunit ribosomal protein L3 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Thermovirga lienii genus=Thermovirga taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
50S ribosomal protein L3
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1546_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


868..1494
DNA (627bp) protein (209aa)
50S ribosomal protein L4 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LH45_9FIRM bin=16ft_combo_ws3_JS1 species=Marvinbryantia formatexigens genus=Marvinbryantia taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
rplD; 50S ribosomal protein L4
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1546_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


1491..1781
DNA (291bp) protein (97aa)
50S ribosomal protein L23 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MK34_9BACT bin=16ft_combo_ws3_JS1 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
rplW; 50S ribosomal protein L23
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1546_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


1798..2622
DNA (825bp) protein (275aa)
50S ribosomal protein L2; K02886 large subunit ribosomal protein L2 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
50S ribosomal protein L2
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1546_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


2633..2926
DNA (294bp) protein (98aa)
30S ribosomal protein S19 Tax=uncultured Chlorobi bacterium RepID=H5SGP9_9BACT bin=16ft_combo_ws3_JS1 species=uncultured Chlorobi bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chlorobi tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
rpsS; 30S ribosomal protein S19
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1546_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


2930..3265
DNA (336bp) protein (112aa)
50S ribosomal protein L22; K02890 large subunit ribosomal protein L22 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
50S ribosomal protein L22
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1546_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


3268..3942
DNA (675bp) protein (225aa)
30S ribosomal protein S3 Tax=Caenispirillum salinarum AK4 RepID=K9HFT5_9PROT bin=16ft_combo_ws3_JS1 species=Caenispirillum salinarum genus=Caenispirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
rpsC; 30S ribosomal protein S3
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1546_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


3949..4371
DNA (423bp) protein (141aa)
50S ribosomal protein L16 Tax=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) RepID=RL16_HALOH bin=16ft_combo_ws3_JS1 species=Halothermothrix orenii genus=Halothermothrix taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
rplP; 50S ribosomal protein L16
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1546_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


4373..4591
DNA (219bp) protein (73aa)
50S ribosomal protein L29 Tax=Acetohalobium arabaticum (strain ATCC 49924 / DSM 5501 / Z-7288) RepID=D9QTF7_ACEAZ bin=16ft_combo_ws3_JS1 species=Acetohalobium arabaticum genus=Acetohalobium taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
50S ribosomal protein L29
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1546_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


4588..4860
DNA (273bp) protein (91aa)
30S ribosomal protein S17 Tax=Alicyclobacillus acidocaldarius RepID=F8ILG3_ALIAT bin=16ft_combo_ws3_JS1 species=Alicyclobacillus acidocaldarius genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
rpsQ; 30S ribosomal protein S17
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1546_12
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


4857..5225
DNA (369bp) protein (123aa)
rplN; 50S ribosomal protein L14; K02874 large subunit ribosomal protein L14 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
ribosomal protein L14
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1546_13
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


5271..5495
DNA (225bp) protein (75aa)
rplX; 50S ribosomal protein L24; K02895 large subunit ribosomal protein L24 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Roseomonas cervicalis genus=Roseomonas taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
rplX; 50S ribosomal protein L24
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1546_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


5589..6287
DNA (699bp) protein (233aa)
50S ribosomal protein L5 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Hyphomicrobium denitrificans genus=Hyphomicrobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
50S ribosomal protein L5
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1546_15
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


6296..6481
DNA (186bp) protein (62aa)
30S ribosomal protein S14 type Z Tax=Thermotoga RepID=RS14Z_THEMA bin=16ft_combo_ws3_JS1 species=unknown genus=Thermotoga taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
30S ribosomal protein S14
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1546_16
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


6537..6935
DNA (399bp) protein (133aa)
rpsH; 30S ribosomal protein S8; K02994 small subunit ribosomal protein S8 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
rpsH; 30S ribosomal protein S8
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1546_17
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


6946..7485
DNA (540bp) protein (180aa)
rplF; 50S ribosomal protein L6; K02933 large subunit ribosomal protein L6 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
50S ribosomal protein L6
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1546_18
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


7482..7847
DNA (366bp) protein (122aa)
50S ribosomal protein L18 Tax=Paenibacillus RepID=F8FA30_PAEMK bin=16ft_combo_ws3_JS1 species=unknown genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
rplR; 50S ribosomal protein L18
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1546_19
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


7856..8407
DNA (552bp) protein (184aa)
30S ribosomal protein S5; K02988 small subunit ribosomal protein S5 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
rpsE; 30S ribosomal protein S5
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1546_20
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


8397..8585
DNA (189bp) protein (63aa)
50S ribosomal protein L30; K02907 large subunit ribosomal protein L30 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
rpmD; 50S ribosomal protein L30
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1546_21
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


8598..9047
DNA (450bp) protein (150aa)
50S ribosomal protein L15; K02876 large subunit ribosomal protein L15 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Sulfobacillus acidophilus genus=Sulfobacillus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
50S ribosomal protein L15
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1546_22
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


9057..10376
DNA (1320bp) protein (440aa)
secY; preprotein translocase subunit SecY bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
secY; preprotein translocase subunit SecY
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1546_23
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

10379..11032
DNA (654bp) protein (218aa)
adenylate kinase (EC:2.7.4.3)
Adenylate kinase bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Archaeoglobus sulfaticallidus genus=Archaeoglobus taxon_order=Archaeoglobales taxon_class=Archaeoglobi phylum=Euryarchaeota tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1546_24
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

11040..11813
DNA (774bp) protein (258aa)
Methionine aminopeptidase Tax=Halobacteroides halobius (strain ATCC 35273 / DSM 5150 / MD-1) RepID=L0K4M2_HALHC bin=16ft_combo_ws3_JS1 species=Halobacteroides halobius genus=Halobacteroides taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
methionine aminopeptidase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1546_25
Halothermothrix orenii, Halothermothrix, Halanaerobiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11843..12025
DNA (183bp) protein (61aa)
Translation initiation factor IF-1 Tax=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) RepID=B8D0T2_HALOH
translation initiation factor IF-1
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; species="Bacteria; Firmicutes; Clostridia; Halanaerobiales; Halanaerobiaceae; Halothermothrix.;" source="Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562).;"
PLM4_5_b1_sep16_scaffold_1546_26
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

12050..12268
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 Tax=Firmicutes RepID=IF1_BACHD bin=16ft_combo_ws3_JS1 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
infA; translation initiation factor IF-1
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1546_27
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

12312..12428
DNA (117bp) protein (39aa)
50S ribosomal protein L36 Tax=Holophaga foetida DSM 6591 RepID=H1P555_9BACT bin=16ft_combo_ws3_JS1 species=Holophaga foetida genus=Holophaga taxon_order=Holophagales taxon_class=Holophagae phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
50S ribosomal protein L36
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1546_28
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


12445..12840
DNA (396bp) protein (132aa)
30S ribosomal protein S13 Tax=Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB) RepID=K4LXM6_THEPS bin=16ft_combo_ws3_JS1 species=Thermacetogenium phaeum genus=Thermacetogenium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
30S ribosomal protein S13
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1546_29
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


12883..13269
DNA (387bp) protein (129aa)
RpsK; 30S ribosomal protein S11; K02948 small subunit ribosomal protein S11 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
RpsK; 30S ribosomal protein S11
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1546_30
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


13278..13907
DNA (630bp) protein (210aa)
30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Thermoanaerobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
30S ribosomal protein S4
Tax=RBG_16_RIF_WS3X_71_46_curated
Displaying items 1-30 of 33 in total

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