ggKbase home page

PLM4_32_b1_sep16_scaffold_2

Search features with annotation key words

Displaying items 1-30 of 231 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_b1_sep16_scaffold_2_1
Flavobacterium sp. MEB061, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

893..1807
DNA (915bp) protein (305aa)
Uncharacterized protein Tax=Flavobacterium johnsoniae RepID=A5FHD3_FLAJ1
Contig_6, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ24291.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. MEB061.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_2_2
unknown

Not on your lists

1958..2332
DNA (375bp) protein (125aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_2_3
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

2482..3189
DNA (708bp) protein (236aa)
MIP family channel protein Tax=Flavobacterium sp. F52 RepID=J0S453_9FLAO
Aquaporin Z {ECO:0000313|EMBL:KFC58849.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
MIP family channel protein
PLM4_32_b1_sep16_scaffold_2_4
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

3264..3866
DNA (603bp) protein (201aa)
Uncharacterized protein {ECO:0000313|EMBL:KFC58850.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
Putative alkylated DNA repair protein bin=GWA2_Flavobacterium_35_26 species=Flavobacterium columnare genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWA2_Flavobacterium_35_26 organism_group=Bacteroidetes organism_desc=Good+ six scaffolds
putative alkylated DNA repair protein
PLM4_32_b1_sep16_scaffold_2_5
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

3992..4387
DNA (396bp) protein (132aa)
sterol desaturase Tax=Flavobacterium sp. ACAM 123 RepID=UPI000316A185
Sterol desaturase {ECO:0000313|EMBL:KIA87535.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
sterol desaturase-like protein
PLM4_32_b1_sep16_scaffold_2_6
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

4481..4819
DNA (339bp) protein (113aa)
sterol desaturase Tax=Flavobacterium sp. ACAM 123 RepID=UPI000316A185
Sterol desaturase {ECO:0000313|EMBL:KIA87535.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
sterol desaturase-like protein
PLM4_32_b1_sep16_scaffold_2_7
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

4937..5215
DNA (279bp) protein (93aa)
Putative uncharacterized protein Tax=Flavobacterium frigoris PS1 RepID=H7FM36_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KIA87534.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_2_8
unknown

Not on your lists

comp(5151..5276)
DNA (126bp) protein (42aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_2_9
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

5350..7215
DNA (1866bp) protein (622aa)
peptidase M61 Tax=Flavobacterium sp. ACAM 123 RepID=UPI00030E660E
Peptidase M61 {ECO:0000313|EMBL:KFC58852.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
peptidase M61 domain-containing protein
PLM4_32_b1_sep16_scaffold_2_10
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

7348..8136
DNA (789bp) protein (263aa)
Putative uncharacterized protein Tax=Flavobacterium frigoris PS1 RepID=H7FM38_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KFC58853.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_2_trna_3
unknown

Not on your lists

comp(8760..8833)
DNA (74bp)
transferRNA Thr
PLM4_32_b1_sep16_scaffold_2_trna_2
unknown

Not on your lists

comp(8907..8980)
DNA (74bp)
transferRNA Thr
PLM4_32_b1_sep16_scaffold_2_11
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9058..9324)
DNA (267bp) protein (89aa)
hypothetical protein Tax=Flavobacterium sp. ACAM 123 RepID=UPI00031DAC81
Uncharacterized protein {ECO:0000313|EMBL:KIA85214.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_2_12
Flavobacterium frigoris, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9393..10358)
DNA (966bp) protein (322aa)
Mannose-6-phosphate isomerase {ECO:0000313|EMBL:EIA10378.1}; EC=5.3.1.8 {ECO:0000313|EMBL:EIA10378.1};; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium frigoris PS1.;"
mannose-6-phosphate isomerase (EC:5.3.1.8)
Mannose-6-phosphate isomerase Tax=Flavobacterium frigoris PS1 RepID=H7FM40_9FLAO
PLM4_32_b1_sep16_scaffold_2_13
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10498..10959)
DNA (462bp) protein (154aa)
alkyl hydroperoxide reductase Tax=Flavobacterium sp. ACAM 123 RepID=UPI00031757D9
Alkyl hydroperoxide reductase {ECO:0000313|EMBL:KIA85215.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
alkyl hydroperoxide reductase
PLM4_32_b1_sep16_scaffold_2_14
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10959..11369)
DNA (411bp) protein (137aa)
6-carboxy-5,6,7,8-tetrahydropterin synthase {ECO:0000256|PIRNR:PIRNR006113}; EC=4.-.-.- {ECO:0000256|PIRNR:PIRNR006113};; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
6-carboxy-5,6,7,8-tetrahydropterin synthase Tax=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) RepID=A6H0I4_FLAPJ
6-pyruvoyl tetrahydrobiopterin synthase
PLM4_32_b1_sep16_scaffold_2_15
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11465..11992)
DNA (528bp) protein (176aa)
Isopentenyl-diphosphate delta-isomerase {ECO:0000313|EMBL:KFC58859.1}; EC=5.3.3.2 {ECO:0000313|EMBL:KFC58859.1};; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
isopentenyl-diphosphate delta-isomerase (EC:5.3.3.2)
Isopentenyl-diphosphate delta-isomerase, type 1 Tax=Flavobacterium sp. CF136 RepID=J3C956_9FLAO
PLM4_32_b1_sep16_scaffold_2_16
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

12156..12620
DNA (465bp) protein (155aa)
Putative acetyltransferase Tax=Flavobacterium frigoris PS1 RepID=H7FM44_9FLAO
Acetyltransferase {ECO:0000313|EMBL:KIA85421.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
putative acetyltransferase
PLM4_32_b1_sep16_scaffold_2_17
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

12761..13312
DNA (552bp) protein (184aa)
methionine-R-sulfoxide reductase (EC:1.8.4.11)
Methionine-R-sulfoxide reductase Tax=Flavobacterium sp. CF136 RepID=J2JFM1_9FLAO
Methionine-R-sulfoxide reductase {ECO:0000313|EMBL:KIA85217.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
PLM4_32_b1_sep16_scaffold_2_18
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

13523..14068
DNA (546bp) protein (182aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
peptide methionine sulfoxide reductase (EC:1.8.4.11)
Peptide methionine sulfoxide reductase MsrA Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FNB2_FLAJ1
PLM4_32_b1_sep16_scaffold_2_19
Paenisporosarcina sp. HGH0030, Paenisporosarcina, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

14158..14703
DNA (546bp) protein (182aa)
Uncharacterized protein Tax=Paenisporosarcina sp. HGH0030 RepID=S2XFY7_9BACL
Uncharacterized protein {ECO:0000313|EMBL:EPD50706.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Planococcaceae; Paenisporosarcina.;" source="Paenisporosarcina sp. HGH0030.;"
MepB domain containing protein
PLM4_32_b1_sep16_scaffold_2_20
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

14810..15295
DNA (486bp) protein (162aa)
Uncharacterized protein Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KSU8_SOLCM
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
PLM4_32_b1_sep16_scaffold_2_21
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

15487..16446
DNA (960bp) protein (320aa)
Alcohol dehydrogenase, zinc-binding domain protein Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FNA0_FLAJ1
Alcohol dehydrogenase {ECO:0000313|EMBL:KIA85221.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
alcohol dehydrogenase
PLM4_32_b1_sep16_scaffold_2_22
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16635..18194)
DNA (1560bp) protein (520aa)
Putative FAD-dependent dehydrogenase Tax=Flavobacterium frigoris PS1 RepID=H7FM48_9FLAO
FAD-dependent dehydrogenase {ECO:0000313|EMBL:KFC58863.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
FAD-binding protein
PLM4_32_b1_sep16_scaffold_2_23
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

18372..18608
DNA (237bp) protein (79aa)
hypothetical protein Tax=Flavobacterium sp. ACAM 123 RepID=UPI0002DFB1DD
Uncharacterized protein {ECO:0000313|EMBL:KFC58864.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_2_24
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18796..20991)
DNA (2196bp) protein (732aa)
ATP-dependent DNA helicase RecQ {ECO:0000313|EMBL:KFC58866.1}; EC=2.7.7.6 {ECO:0000313|EMBL:KFC58866.1};; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
ATP-dependent DNA helicase RecQ Tax=Flavobacterium sp. WG21 RepID=UPI00034D8C7F
ATP-dependent DNA helicase RecQ
PLM4_32_b1_sep16_scaffold_2_25
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

21002..22042
DNA (1041bp) protein (347aa)
KpsF/GutQ family protein (EC:5.3.1.13)
D-arabinose 5-phosphate isomerase Tax=Flavobacterium sp. ACAM 123 RepID=UPI000377FD3F
D-arabinose 5-phosphate isomerase {ECO:0000313|EMBL:KFC58867.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
PLM4_32_b1_sep16_scaffold_2_26
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

22042..22857
DNA (816bp) protein (272aa)
preprotein translocase subunit TatC Tax=Flavobacterium sp. WG21 RepID=UPI000349CAAB
Sec-independent protein translocase protein TatC {ECO:0000256|HAMAP-Rule:MF_00902}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
Sec-independent protein translocase subunit TatC
PLM4_32_b1_sep16_scaffold_2_27
Flavobacterium hydatis, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

22850..23197
DNA (348bp) protein (116aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium hydatis (Cytophaga aquatilis).;"
Alkylhydroperoxidase AhpD family core domain-containing protein Tax=Flavobacterium sp. CF136 RepID=J2JFL3_9FLAO
alkylhydroperoxidase
PLM4_32_b1_sep16_scaffold_2_28
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

23369..24109
DNA (741bp) protein (247aa)
ABC-type (Unclassified) transport system, ATPase component Tax=Flavobacterium sp. CF136 RepID=J3C939_9FLAO
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KFC58870.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
ABC transporter-like protein
Displaying items 1-30 of 231 in total

View Taxonomy