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PLM4_32_b1_sep16_scaffold_13

Search features with annotation key words

Displaying items 1-30 of 100 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_b1_sep16_scaffold_13_1
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(3..881)
DNA (879bp) protein (293aa)
gh3 auxin-responsive promoter Tax=Flavobacterium sp. ACAM 123 RepID=UPI00036E15B9
Putative auxin-regulated protein {ECO:0000313|EMBL:KFC59861.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_13_2
Flavobacterium frigoris, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(909..1427)
DNA (519bp) protein (173aa)
Lipoprotein NlpD Tax=Flavobacterium frigoris PS1 RepID=H7FNI8_9FLAO
Lipoprotein NlpD {ECO:0000313|EMBL:EIA09977.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium frigoris PS1.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_13_3
Flavobacterium sp. KMS, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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1549..1815
DNA (267bp) protein (89aa)
Sec-independent protein translocase protein TatA Tax=Flavobacterium sp. CF136 RepID=J2JPJ4_9FLAO
Sec-independent protein translocase protein TatA {ECO:0000256|HAMAP-Rule:MF_00236}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. KMS.;"
twin arginine-targeting protein translocase
PLM4_32_b1_sep16_scaffold_13_4
Flavobacterium frigoris, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(1854..3977)
DNA (2124bp) protein (708aa)
S1 RNA binding domain protein Tax=Flavobacterium frigoris PS1 RepID=H7FNI5_9FLAO
S1 RNA binding domain protein {ECO:0000313|EMBL:EIA09974.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium frigoris PS1.;"
RNA-binding S1 domain-containing protein
PLM4_32_b1_sep16_scaffold_13_5
Flavobacterium sp. KMS, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(4518..4949)
DNA (432bp) protein (144aa)
Ribose 5-phosphate isomerase B Tax=Flavobacterium sp. CF136 RepID=J2J4B8_9FLAO
Ribose 5-phosphate isomerase {ECO:0000313|EMBL:KIA98013.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. KMS.;"
RpiB/LacA/LacB family sugar-phosphate isomerase
PLM4_32_b1_sep16_scaffold_13_6
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5684..5917)
DNA (234bp) protein (78aa)
Uncharacterized protein Tax=Flavobacterium sp. CF136 RepID=J3C2M9_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KFC57608.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_13_7
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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6026..8203
DNA (2178bp) protein (726aa)
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
ribonuclease R (EC:3.1.13.1)
Ribonuclease R Tax=Flavobacterium frigoris PS1 RepID=H7FNI0_9FLAO
PLM4_32_b1_sep16_scaffold_13_8
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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8248..8916
DNA (669bp) protein (223aa)
Putative uncharacterized protein Tax=Flavobacterium frigoris PS1 RepID=H7FNH9_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KFC57610.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_13_9
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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8949..9626
DNA (678bp) protein (226aa)
Putative uncharacterized protein Tax=Flavobacterium frigoris PS1 RepID=H7FNH8_9FLAO
Lysine transporter LysE {ECO:0000313|EMBL:KFC57611.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
lysine exporter protein LysE/YggA
PLM4_32_b1_sep16_scaffold_13_trna_1
unknown

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comp(9824..9894)
DNA (71bp)
transferRNA Cys
PLM4_32_b1_sep16_scaffold_13_10
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(9979..10347)
DNA (369bp) protein (123aa)
Dihydroneopterin aldolase {ECO:0000313|EMBL:KFC57576.1}; EC=4.1.2.25 {ECO:0000313|EMBL:KFC57576.1};; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
Dihydroneopterin aldolase Tax=Flavobacterium sp. F52 RepID=J0RPL6_9FLAO
dihydroneopterin aldolase
PLM4_32_b1_sep16_scaffold_13_11
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

10609..12705
DNA (2097bp) protein (699aa)
Glutamine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00016670}; EC=6.1.1.18 {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00023088};; Glutaminyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00126}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
Glutaminyl-tRNA synthetase Tax=Flavobacterium frigoris PS1 RepID=H7FNH5_9FLAO
glutaminyl-tRNA synthetase
PLM4_32_b1_sep16_scaffold_13_12
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

13280..13609
DNA (330bp) protein (110aa)
Uncharacterized protein Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FL77_FLAJ1
Uncharacterized protein {ECO:0000313|EMBL:KFC58192.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_13_13
Flavobacterium sp. CF136, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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13621..13971
DNA (351bp) protein (117aa)
Competence protein Tax=Flavobacterium sp. CF136 RepID=J3C2D1_9FLAO
Competence protein {ECO:0000313|EMBL:EJL62921.1}; Flags: Precursor;; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. CF136.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_13_14
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

13974..14228
DNA (255bp) protein (85aa)
Uncharacterized protein Tax=Flavobacterium sp. CF136 RepID=J2J4A9_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KFC58194.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_13_15
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14257..15246)
DNA (990bp) protein (330aa)
Putative stomatin/prohibitin-family membrane protease subunit YbbK Tax=Flavobacterium frigoris PS1 RepID=H7FNH1_9FLAO
Protease {ECO:0000313|EMBL:KIA86942.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_13_16
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15340..16887)
DNA (1548bp) protein (516aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
gltX; glutamyl-tRNA synthetase (EC:6.1.1.17)
Glutamate--tRNA ligase Tax=Flavobacterium frigoris PS1 RepID=H7FNG9_9FLAO
PLM4_32_b1_sep16_scaffold_13_17
unknown

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comp(16838..16942)
DNA (105bp) protein (35aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_13_18
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

16998..20321
DNA (3324bp) protein (1108aa)
Uncharacterized protein Tax=Flavobacterium sp. CF136 RepID=J2SC20_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KFC58197.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_13_19
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

20318..20737
DNA (420bp) protein (140aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009};; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
Endoribonuclease YbeY Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=YBEY_FLAJ1
hypothetical protein
PLM4_32_b1_sep16_scaffold_13_20
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

20926..22797
DNA (1872bp) protein (624aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG Tax=Flavobacterium sp. CF136 RepID=J2J4A4_9FLAO
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000256|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000256|HAMAP-Rule:MF_00129}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
gidA; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
PLM4_32_b1_sep16_scaffold_13_21
Flavobacterium sp. MEB061, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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23096..23563
DNA (468bp) protein (156aa)
Uncharacterized protein Tax=Flavobacterium sp. CF136 RepID=J3C2M0_9FLAO
Contig_18, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ21455.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. MEB061.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_13_22
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

24001..24849
DNA (849bp) protein (283aa)
SAM-dependent methyltransferase Tax=Flavobacterium frigoris PS1 RepID=H7FNG5_9FLAO
Methyltransferase {ECO:0000313|EMBL:KFC58200.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
type 11 methyltransferase
PLM4_32_b1_sep16_scaffold_13_23
Flavobacterium johnsoniae, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

25096..25650
DNA (555bp) protein (185aa)
Outer membrane chaperone Skp (OmpH) Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FL83_FLAJ1
outer membrane chaperone Skp
Outer membrane chaperone Skp (OmpH) {ECO:0000313|EMBL:ABQ04033.1}; Flags: Precursor;; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101); (Cytophaga johnsonae).;"
PLM4_32_b1_sep16_scaffold_13_24
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

25756..28029
DNA (2274bp) protein (758aa)
Putative helicase Tax=Flavobacterium frigoris PS1 RepID=H7FNG3_9FLAO
Helicase {ECO:0000313|EMBL:KFC59153.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
helicase
PLM4_32_b1_sep16_scaffold_13_25
Flavobacterium enshiense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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28327..29532
DNA (1206bp) protein (402aa)
Uncharacterized protein Tax=Flavobacterium enshiense DK69 RepID=V6S1R9_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KGO92609.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium enshiense DK69.;"
acyltransferase
PLM4_32_b1_sep16_scaffold_13_26
Flavobacterium sp. CF136, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

30112..31755
DNA (1644bp) protein (548aa)
Periplasmic protease Tax=Flavobacterium sp. CF136 RepID=J3C1C8_9FLAO
Periplasmic protease {ECO:0000313|EMBL:EJL62346.1}; Flags: Precursor;; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. CF136.;"
peptidase S41
PLM4_32_b1_sep16_scaffold_13_27
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

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32168..32647
DNA (480bp) protein (160aa)
id=3803301 bin=GWF2_Ignavibacteria_33_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Ignavibacteria_33_9 organism_group=Ignavibacteria
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
PLM4_32_b1_sep16_scaffold_13_28
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(32691..33230)
DNA (540bp) protein (180aa)
hypothetical protein Tax=Flavobacterium sp. ACAM 123 RepID=UPI0003776606
Uncharacterized protein {ECO:0000313|EMBL:KIA85795.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_13_29
Araucaria cunninghamii, Araucaria, Araucariales, Pinidae, Streptophyta, Viridiplantae

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comp(34212..35093)
DNA (882bp) protein (294aa)
Transposase of, putative Tax=Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87) RepID=D5BIT3_ZUNPS
Uncharacterized protein {ECO:0000313|EMBL:JAG93610.1}; species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Pinidae; Araucariales; Araucariaceae; Araucaria.;" source="Araucaria cunninghamii (Hoop pine) (Moreton Bay pine).;"
transposase of
Displaying items 1-30 of 100 in total

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