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PLM4_32_b1_sep16_scaffold_20

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Displaying items 1-30 of 56 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_b1_sep16_scaffold_20_1
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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1..1089
DNA (1089bp) protein (363aa)
methylmalonyl-CoA mutase (EC:5.4.99.2)
Methylmalonyl-CoA mutase Tax=Flavobacterium frigoris PS1 RepID=H7FRC5_9FLAO
Methylmalonyl-CoA mutase {ECO:0000313|EMBL:KFC60834.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
PLM4_32_b1_sep16_scaffold_20_2
Flavobacterium frigoris, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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1413..3542
DNA (2130bp) protein (710aa)
Methylmalonyl-CoA mutase {ECO:0000313|EMBL:EIA08907.1}; EC=5.4.99.2 {ECO:0000313|EMBL:EIA08907.1};; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium frigoris PS1.;"
methylmalonyl-CoA mutase (EC:5.4.99.2)
Methylmalonyl-CoA mutase Tax=Flavobacterium frigoris PS1 RepID=H7FRC4_9FLAO
PLM4_32_b1_sep16_scaffold_20_3
unknown

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comp(3511..3708)
DNA (198bp) protein (66aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_20_4
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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3951..4490
DNA (540bp) protein (180aa)
Secreted protein Tax=Flavobacterium cauense R2A-7 RepID=V6RXT7_9FLAO
Secreted protein {ECO:0000313|EMBL:KFC60832.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
nicotinic acid mononucleotide adenyltransferase
PLM4_32_b1_sep16_scaffold_20_5
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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5455..5799
DNA (345bp) protein (115aa)
Secreted protein Tax=Flavobacterium limnosediminis JC2902 RepID=V6SPY3_9FLAO
Secreted protein {ECO:0000313|EMBL:KFC60832.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
nicotinic acid mononucleotide adenyltransferase
PLM4_32_b1_sep16_scaffold_20_6
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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6100..6636
DNA (537bp) protein (179aa)
Secreted protein Tax=Flavobacterium frigoris PS1 RepID=H7FRC2_9FLAO
Secreted protein {ECO:0000313|EMBL:KFC60832.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_20_7
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(6720..7355)
DNA (636bp) protein (212aa)
Peptidoglycan-binding protein LysM {ECO:0000313|EMBL:KFC60831.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
Uncharacterized protein bin=GWA2_Flavobacterium_35_26 species=Flavobacterium sp. CF136 genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWA2_Flavobacterium_35_26 organism_group=Bacteroidetes organism_desc=Good+ six scaffolds
hypothetical protein
PLM4_32_b1_sep16_scaffold_20_8
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(7936..8976)
DNA (1041bp) protein (347aa)
Aminodeoxychorismate lyase Tax=Flavobacterium frigoris PS1 RepID=H7FRB9_9FLAO
Aminodeoxychorismate lyase {ECO:0000313|EMBL:KIA87595.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
aminodeoxychorismate lyase
PLM4_32_b1_sep16_scaffold_20_9
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(8997..9548)
DNA (552bp) protein (184aa)
Spermidine N1-acetyltransferase Tax=Flavobacterium frigoris PS1 RepID=H7FRB8_9FLAO
Acetyltransferase {ECO:0000313|EMBL:KFC60828.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
N-acetyltransferase GCN5
PLM4_32_b1_sep16_scaffold_20_10
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(9613..10395)
DNA (783bp) protein (261aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase Tax=Flavobacterium sp. CF136 RepID=J2JKE9_9FLAO
PLM4_32_b1_sep16_scaffold_20_11
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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10534..11931
DNA (1398bp) protein (466aa)
protease Do (EC:1.3.1.74)
Peptidase, subfamily S1B unassigned peptidases Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FP10_FLAJ1
Serine protease {ECO:0000313|EMBL:KFC60826.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
PLM4_32_b1_sep16_scaffold_20_12
Myroides odoratimimus, Myroides, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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12145..15048
DNA (2904bp) protein (968aa)
4Fe-4S ferredoxin Tax=Myroides injenensis RepID=UPI0002882237
Uncharacterized protein {ECO:0000313|EMBL:EHO08854.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Myroides.;" source="Myroides odoratimimus CIP 101113.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_20_13
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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15474..16922
DNA (1449bp) protein (483aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.12)
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase Tax=Flavobacterium frigoris PS1 RepID=H7FRB4_9FLAO
PLM4_32_b1_sep16_scaffold_20_14
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17432..17890)
DNA (459bp) protein (153aa)
AsnC family transcriptional regulator {ECO:0000313|EMBL:KIA87591.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
AsnC family transcriptional regulator bin=GWA2_Flavobacterium_35_26 species=unknown genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWA2_Flavobacterium_35_26 organism_group=Bacteroidetes organism_desc=Good+ six scaffolds
AsnC family transcriptional regulator
PLM4_32_b1_sep16_scaffold_20_15
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

18093..19187
DNA (1095bp) protein (365aa)
Alanine dehydrogenase {ECO:0000256|PIRNR:PIRNR000183}; EC=1.4.1.1 {ECO:0000256|PIRNR:PIRNR000183};; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
alanine dehydrogenase (EC:1.4.1.1)
Alanine dehydrogenase Tax=Flavobacterium sp. F52 RepID=J1KMY8_9FLAO
PLM4_32_b1_sep16_scaffold_20_16
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19505..20914)
DNA (1410bp) protein (470aa)
Amino acid transporter {ECO:0000313|EMBL:KFC60820.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
Amino acid transporter bin=GWA2_Flavobacterium_35_26 species=Flavobacterium sp. CF136 genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWA2_Flavobacterium_35_26 organism_group=Bacteroidetes organism_desc=Good+ six scaffolds
amino acid permease
PLM4_32_b1_sep16_scaffold_20_17
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21132..22526)
DNA (1395bp) protein (465aa)
LysM domain/NLP/P60 family protein Tax=Flavobacterium frigoris PS1 RepID=H7FRA1_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KFC60819.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_20_18
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22757..23389)
DNA (633bp) protein (211aa)
Uncharacterized protein Tax=Cecembia lonarensis LW9 RepID=K1LEU6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KFC60818.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
hemolysin III family channel protein
PLM4_32_b1_sep16_scaffold_20_19
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(23661..25094)
DNA (1434bp) protein (478aa)
Membrane bound O-acyl transferase MBOAT family protein Tax=Fibrisoma limi BUZ 3 RepID=I2GK02_9BACT
Acyltransferase {ECO:0000313|EMBL:KIC94016.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
membrane protein involved in D-alanine export DltB-like protein
PLM4_32_b1_sep16_scaffold_20_20
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(25131..26174)
DNA (1044bp) protein (348aa)
Uncharacterized protein Tax=Fibrisoma limi BUZ 3 RepID=I2GRE5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KIC94202.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_20_21
Flavobacterium limnosediminis, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(27243..27632)
DNA (390bp) protein (130aa)
Uncharacterized protein Tax=Flavobacterium limnosediminis JC2902 RepID=V6SIC0_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:ESU26331.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium limnosediminis JC2902.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_20_22
RBG_16_Ignavibacteria_34_14_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

28384..30390
DNA (2007bp) protein (669aa)
hypothetical protein Tax=Sandarakinorhabdus sp. AAP62 RepID=UPI0003038082
WD40-like beta Propeller containing protein
Tax=RBG_16_Ignavibacteria_34_14_curated
PLM4_32_b1_sep16_scaffold_20_23
GWC2_Ignavibacteria_rel_36_12_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

30554..30775
DNA (222bp) protein (74aa)
hypothetical protein Tax=Massilia niastensis RepID=UPI00036634DB
hypothetical protein
Tax=GWC2_Ignavibacteria_rel_36_12_curated
PLM4_32_b1_sep16_scaffold_20_24
Flavobacteriaceae bacterium 3519-10, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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31288..31695
DNA (408bp) protein (136aa)
Uncharacterized conserved protein, contains double-stranded beta-helix domain Tax=Flavobacteriaceae bacterium (strain 3519-10) RepID=C6X4B8_FLAB3
hypothetical protein
Uncharacterized conserved protein, contains double-stranded beta-helix domain {ECO:0000313|EMBL:ACU07256.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae.;" source="Flavobacteriaceae bacterium (strain 3519-10).;"
PLM4_32_b1_sep16_scaffold_20_25
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(31855..32415)
DNA (561bp) protein (187aa)
Uncharacterized protein Tax=Flavobacterium sp. CF136 RepID=J3BXW3_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KIA85655.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_20_26
GWF1_Flavobacteria_32_7_curated, Flavobacteriia, Bacteroidetes, Bacteria

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32713..33318
DNA (606bp) protein (202aa)
Putative uncharacterized protein bin=GWF1_Flavobacteria_32_7 species=Haliscomenobacter hydrossis genus=Haliscomenobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWF1_Flavobacteria_32_7 organism_group=Bacteroidetes
hypothetical protein
Tax=GWF1_Flavobacteria_32_7_curated
PLM4_32_b1_sep16_scaffold_20_27
Flavobacterium frigoris, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

33334..33771
DNA (438bp) protein (146aa)
Acetyltransferase, GNAT family Tax=Flavobacterium frigoris PS1 RepID=H7FLP4_9FLAO
Acetyltransferase, GNAT family {ECO:0000313|EMBL:EIA10586.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium frigoris PS1.;"
GNAT family acetyltransferase
PLM4_32_b1_sep16_scaffold_20_28
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(34081..36348)
DNA (2268bp) protein (756aa)
Aconitate hydratase Tax=Flavobacterium saliperosum S13 RepID=V6SM14_9FLAO
Aconitate hydratase {ECO:0000313|EMBL:KFC60816.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
aconitate hydratase
PLM4_32_b1_sep16_scaffold_20_29
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(36471..39239)
DNA (2769bp) protein (923aa)
bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase (EC:4.2.1.3)
Aconitate hydratase 2 Tax=Flavobacterium frigoris PS1 RepID=H7FR99_9FLAO
Aconitate hydratase {ECO:0000313|EMBL:KIA87581.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
PLM4_32_b1_sep16_scaffold_20_30
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(39573..40526)
DNA (954bp) protein (318aa)
MoxR-like ATPase Tax=Flavobacterium sp. CF136 RepID=J2J8S5_9FLAO
ATPase AAA {ECO:0000313|EMBL:KFC58382.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
ATPase
Displaying items 1-30 of 56 in total

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