ggKbase home page

PLM4_32_b1_sep16_scaffold_153

Search features with annotation key words

Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_b1_sep16_scaffold_153_1
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2..940)
DNA (939bp) protein (313aa)
hypothetical protein Tax=Flavobacterium sp. ACAM 123 RepID=UPI000312C6A0
Uncharacterized protein {ECO:0000313|EMBL:KIA87555.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_153_2
Flavobacterium sp. KMS, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1109..1591)
DNA (483bp) protein (161aa)
Exonuclease Tax=Flavobacterium frigoris PS1 RepID=H7FR75_9FLAO
DNA polymerase III subunit epsilon {ECO:0000313|EMBL:KIC00339.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. KMS.;"
DNA polymerase III subunit epsilon
PLM4_32_b1_sep16_scaffold_153_3
Flavobacterium sp. F52, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1693..3054)
DNA (1362bp) protein (454aa)
Pyridoxal-5'-phosphate-dependent enzyme subunit beta Tax=Flavobacterium sp. F52 RepID=J1KRR3_9FLAO
Pyridoxal-5'-phosphate-dependent enzyme subunit beta {ECO:0000313|EMBL:EJG00521.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. F52.;"
pyridoxal-5'-phosphate-dependent enzyme subunit beta
PLM4_32_b1_sep16_scaffold_153_4
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3099..5054)
DNA (1956bp) protein (652aa)
Uncharacterized protein {ECO:0000313|EMBL:KFC58408.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
Putative uncharacterized protein bin=GWA2_Flavobacterium_35_26 species=Flavobacterium frigoris genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWA2_Flavobacterium_35_26 organism_group=Bacteroidetes organism_desc=Good+ six scaffolds
hypothetical protein
PLM4_32_b1_sep16_scaffold_153_5
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

5579..6259
DNA (681bp) protein (227aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.- {ECO:0000256|RuleBase:RU003515};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
Ribonuclease HII Tax=Flavobacterium frigoris PS1 RepID=H7FR72_9FLAO
ribonuclease HII
PLM4_32_b1_sep16_scaffold_153_6
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6289..6987)
DNA (699bp) protein (233aa)
Octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262}; EC=2.3.1.181 {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262};; Lipoate-protein ligase B {ECO:0000256|HAMAP-Rule:MF_00013}; Lipoyl/octanoyl transferase {ECO:0000256|HAMAP-Rule:MF_00013}; Octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
Octanoyltransferase Tax=Flavobacterium frigoris PS1 RepID=H7FR71_9FLAO
lipoate-protein ligase B
PLM4_32_b1_sep16_scaffold_153_7
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7173..7913)
DNA (741bp) protein (247aa)
Uncharacterized protein Tax=Flavobacterium sp. CF136 RepID=J2J8M6_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KIA87870.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_153_8
Flavobacterium frigoris, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

8299..10041
DNA (1743bp) protein (581aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium frigoris PS1.;"
lysS; lysyl-tRNA synthetase (EC:6.1.1.6)
Lysine--tRNA ligase Tax=Flavobacterium frigoris PS1 RepID=H7FR69_9FLAO
PLM4_32_b1_sep16_scaffold_153_9
GWB2_Bacteroidetes_41_8_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

10177..10407
DNA (231bp) protein (77aa)
hypothetical protein Tax=Anaerophaga thermohalophila RepID=UPI000237D40D
hypothetical protein
Tax=GWB2_Bacteroidetes_41_8_curated
PLM4_32_b1_sep16_scaffold_153_10
GWB2_Bacteroidetes_41_8_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

10407..10772
DNA (366bp) protein (122aa)
Uncharacterized protein Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8ELL9_RUNSL
hypothetical protein
Tax=GWB2_Bacteroidetes_41_8_curated
PLM4_32_b1_sep16_scaffold_153_11
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

10890..11123
DNA (234bp) protein (78aa)
Uncharacterized protein {ECO:0000313|EMBL:KFC59108.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
PLM4_32_b1_sep16_scaffold_153_12
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11198..12472)
DNA (1275bp) protein (425aa)
Uncharacterized protein Tax=Flavobacterium sp. CF136 RepID=J3C382_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KFC59107.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_153_13
Flavobacterium cauense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12485..13090)
DNA (606bp) protein (202aa)
SCO1/SenC/PrrC protein, involved in biogenesis of respiratory and photosynthetic system Tax=Flavobacterium cauense R2A-7 RepID=V6RYR0_9FLAO
SCO1/SenC/PrrC protein, involved in biogenesis of respiratory and photosynthetic system {ECO:0000313|EMBL:ESU19631.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium cauense R2A-7.;"
electron transport protein SCO1/SenC
PLM4_32_b1_sep16_scaffold_153_14
Flavobacterium enshiense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13121..13894)
DNA (774bp) protein (258aa)
Uncharacterized protein Tax=Flavobacterium enshiense DK69 RepID=V6S9R6_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KGO96377.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium enshiense DK69.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_153_15
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13922..14365)
DNA (444bp) protein (148aa)
Cytochrome c, mono-and diheme variants family Tax=Flavobacterium sp. CF136 RepID=J3C3G0_9FLAO
Cytochrome c, mono-and diheme variants family {ECO:0000313|EMBL:KFC59104.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
putative nitrite reductase
PLM4_32_b1_sep16_scaffold_153_16
Flavobacterium enshiense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14424..15899)
DNA (1476bp) protein (492aa)
nitrite reductase (EC:1.7.2.1)
Nitrite reductase, copper-containing Tax=Flavobacterium enshiense DK69 RepID=V6S9P4_9FLAO
Membrane protein {ECO:0000313|EMBL:KGO96375.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium enshiense DK69.;"
PLM4_32_b1_sep16_scaffold_153_17
unknown

Not on your lists

15915..16022
DNA (108bp) protein (36aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_153_18
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16025..16267)
DNA (243bp) protein (81aa)
Uncharacterized protein Tax=Flavobacterium columnare (strain ATCC 49512 / CIP 103533 / TG 44/87) RepID=G8X9Y9_FLACA
Uncharacterized protein {ECO:0000313|EMBL:KFC59102.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_153_19
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16270..16851)
DNA (582bp) protein (194aa)
Putative nitric oxide reductase (Nor) complex membrane protein {ECO:0000313|EMBL:KFC59101.1}; EC=1.9.3.1 {ECO:0000313|EMBL:KFC59101.1};; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
Putative nitric oxide reductase (Nor) complex membrane protein Tax=Flavobacterium enshiense DK69 RepID=V6S9Q6_9FLAO
putative nitric oxide reductase (Nor) complex membrane protein
PLM4_32_b1_sep16_scaffold_153_20
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17169..18134)
DNA (966bp) protein (322aa)
Pas/pac sensor protein Tax=Flavobacterium saliperosum S13 RepID=V6SMQ9_9FLAO
Pas/pac sensor protein {ECO:0000313|EMBL:KFC59100.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
PAS/PAC sensor protein
PLM4_32_b1_sep16_scaffold_153_21
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18298..20073)
DNA (1776bp) protein (592aa)
Nitric oxide reductase activation protein Tax=Flavobacterium enshiense DK69 RepID=V6SAB0_9FLAO
Nitric oxide reductase activation protein {ECO:0000313|EMBL:KFC59099.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
nitric oxide reductase activation protein
PLM4_32_b1_sep16_scaffold_153_22
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20155..20934)
DNA (780bp) protein (260aa)
Nitric oxide reductase NorQ protein Tax=Flavobacterium saliperosum S13 RepID=V6SN99_9FLAO
Nitric oxide reductase NorQ protein {ECO:0000313|EMBL:KFC59098.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
nitric oxide reductase NorQ protein
PLM4_32_b1_sep16_scaffold_153_23
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21243..22577)
DNA (1335bp) protein (445aa)
nitric oxide reductase, norb subunit apoprotein (EC:1.7.2.5)
Nitric-oxide reductase subunit B Tax=Flavobacterium cauense R2A-7 RepID=V6S015_9FLAO
Nitric-oxide reductase subunit B {ECO:0000313|EMBL:KFC59097.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
PLM4_32_b1_sep16_scaffold_153_24
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22589..23023)
DNA (435bp) protein (145aa)
Nitric oxide reductase, cytochrome c-containing subunit Tax=Flavobacterium limnosediminis JC2902 RepID=V6SRF3_9FLAO
Nitric oxide reductase, cytochrome c-containing subunit {ECO:0000313|EMBL:KFC59096.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
nitric oxide reductase, cytochrome c-containing subunit
PLM4_32_b1_sep16_scaffold_153_25
Flavobacterium sp. CF136, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

23454..24185
DNA (732bp) protein (244aa)
Iron-sulfur cluster repair di-iron protein Tax=Flavobacterium sp. CF136 RepID=J3C385_9FLAO
Iron-sulfur cluster repair di-iron protein {ECO:0000313|EMBL:EJL63416.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. CF136.;"
iron-sulfur cluster repair di-iron protein
PLM4_32_b1_sep16_scaffold_153_26
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

24216..26321
DNA (2106bp) protein (702aa)
Anaerobic ribonucleoside-triphosphate reductase Tax=Flavobacterium sp. CF136 RepID=J2SDE1_9FLAO
Ribonucleoside triphosphate reductase {ECO:0000313|EMBL:KFC60513.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
anaerobic ribonucleoside-triphosphate reductase
PLM4_32_b1_sep16_scaffold_153_27
Flavobacterium sp. CF136, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

26511..26678
DNA (168bp) protein (56aa)
Uncharacterized protein Tax=Flavobacterium sp. CF136 RepID=J2JQX9_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EJL63418.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. CF136.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_153_28
Flavobacterium sp. CF136, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

26632..27348
DNA (717bp) protein (239aa)
Anaerobic ribonucleoside-triphosphate reductase activating protein Tax=Flavobacterium sp. CF136 RepID=J3C3G2_9FLAO
Anaerobic ribonucleoside-triphosphate reductase activating protein {ECO:0000313|EMBL:EJL63419.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. CF136.;"
anaerobic ribonucleoside-triphosphate reductase activating protein
PLM4_32_b1_sep16_scaffold_153_29
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

27354..28589
DNA (1236bp) protein (412aa)
Uncharacterized protein Tax=Flavobacterium sp. CF136 RepID=J2J5Q6_9FLAO
Membrane protein {ECO:0000313|EMBL:KFC60511.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_153_30
Flavobacterium sp. CF136, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

28635..29069
DNA (435bp) protein (145aa)
Rrf2 family protein, putative transcriptional regulator Tax=Flavobacterium sp. CF136 RepID=J2SDE6_9FLAO
Rrf2 family protein, putative transcriptional regulator {ECO:0000313|EMBL:EJL63422.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. CF136.;"
BadM/Rrf2 family transcriptional regulator
Displaying items 1-30 of 48 in total

View Taxonomy