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PLM4_32_b1_sep16_scaffold_1215

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_b1_sep16_scaffold_1215_1
RBG_13_RIF03_48_7_curated, RIF3, Bacteria

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1..984
DNA (984bp) protein (328aa)
Menaquinol oxidoreductase complex ACIII, menaquinol-binding membrane protein subunit ActF bin=GWA2_Deltaproteo_65_63 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Deltaproteo_65_63 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RBG_13_RIF03_48_7_curated
PLM4_32_b1_sep16_scaffold_1215_2

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1141..1584
DNA (444bp) protein (148aa)
50S ribosomal protein L13 Tax=Roseiflexus sp. (strain RS-1) RepID=RL13_ROSS1
Marine sediment metagenome DNA, contig: S01H1_L00705 {ECO:0000313|EMBL:GAF68962.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
rplM; 50S ribosomal protein L13
PLM4_32_b1_sep16_scaffold_1215_3
Eubacterium plexicaudatum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1608..2021
DNA (414bp) protein (138aa)
30S ribosomal protein S9 Tax=Eubacterium plexicaudatum ASF492 RepID=N2A796_9FIRM
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium plexicaudatum ASF492.;"
RpsI; 30S ribosomal protein S9
PLM4_32_b1_sep16_scaffold_1215_4
Sphaerochaeta pleomorpha, Sphaerochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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2241..2996
DNA (756bp) protein (252aa)
30S ribosomal protein S2 Tax=Sphaerochaeta pleomorpha (strain ATCC BAA-1885 / DSM 22778 / Grapes) RepID=G8QXY0_SPHPG
30S ribosomal protein S2
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Sphaerochaeta.;" source="Sphaerochaeta pleomorpha (strain ATCC BAA-1885 / DSM 22778 / Grapes).;"
PLM4_32_b1_sep16_scaffold_1215_5
Caldithrix abyssi, Caldithrix, Bacteria

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3039..3632
DNA (594bp) protein (198aa)
Elongation factor Ts Tax=Caldithrix abyssi DSM 13497 RepID=H1XXB6_9BACT
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; species="Bacteria; Caldithrix.;" source="Caldithrix abyssi DSM 13497.;"
translation elongation factor Ts (EF-Ts)
PLM4_32_b1_sep16_scaffold_1215_6
R_OP3X_45_10, OP3X, Bacteria

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3644..4357
DNA (714bp) protein (238aa)
Uridylate kinase bin=GWD2_Deltaproteobacteria_55_8 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
pyrH; uridylate kinase
Tax=RIFCSPLOWO2_01_FULL_OP3X_45_10_curated
PLM4_32_b1_sep16_scaffold_1215_7
RBG_13_Caldithrix_44_9_curated, Caldithrix, Bacteria

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4369..4926
DNA (558bp) protein (186aa)
Ribosome-recycling factor Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=RRF_SYMTH
ribosome recycling factor
Tax=RBG_13_Caldithrix_44_9_curated
PLM4_32_b1_sep16_scaffold_1215_8
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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4997..5743
DNA (747bp) protein (249aa)
undecaprenyl pyrophosphate synthetase (EC:2.5.1.31)
Isoprenyl transferase bin=GWC2_Methylomirabilis_70_24 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_1215_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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5755..6618
DNA (864bp) protein (288aa)
CDP-diglyceride synthetase bin=bin1_lowGC species=Orenia marismortui genus=Orenia taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=bin1_lowGC organism_group=Unknown_CP
CDP-diglyceride synthetase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_32_b1_sep16_scaffold_1215_10
R_NC10_66_22, NC10, Bacteria

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6650..7819
DNA (1170bp) protein (390aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CNP8_DESK7
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_32_b1_sep16_scaffold_1215_11
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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7833..9215
DNA (1383bp) protein (461aa)
rseP; regulator of sigma E protease (EC:3.4.24.-); K11749 regulator of sigma E protease [EC:3.4.24.-] bin=bin7_NC10_sister species=Thioalkalivibrio sp. ALJ24 genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
rseP; RIP metalloprotease RseP (EC:3.4.24.-)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM4_32_b1_sep16_scaffold_1215_12
unknown

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comp(9195..9533)
DNA (339bp) protein (113aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_1215_13
RIFOXYC12_FULL_TA06_54_24_curated, TA06, Bacteria

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9544..11031
DNA (1488bp) protein (496aa)
Surface antigen (D15) bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
putative outer membrane protein assembly factor YaeT
Tax=RIFOXYC12_FULL_TA06_54_24_curated
Displaying 13 items

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