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PLM4_32_b1_sep16_scaffold_835

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_b1_sep16_scaffold_835_1
Chloroflexus aggregans, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(2..283)
DNA (282bp) protein (94aa)
Diacylglycerol kinase catalytic region Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=B8GAG1_CHLAD
diacylglycerol kinase catalytic subunit
Diacylglycerol kinase catalytic region {ECO:0000313|EMBL:ACL26536.1}; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus.;" source="Chloroflexus aggregans (strain MD-66 / DSM 9485).;"
PLM4_32_b1_sep16_scaffold_835_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(309..971)
DNA (663bp) protein (221aa)
alias=16ft_combo_ws3_scaffold_144_47 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_32_b1_sep16_scaffold_835_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(962..2365)
DNA (1404bp) protein (468aa)
2-amino-3-ketobutyrate CoA ligase (EC:2.3.1.29); K00639 glycine C-acetyltransferase [EC:2.3.1.29] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Pseudoalteromonas citrea genus=Pseudoalteromonas taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
2-amino-3-ketobutyrate coenzyme A ligase (EC:2.3.1.29)
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_32_b1_sep16_scaffold_835_4
RBG_16_Actinobacteria_68_21_curated, Acidimicrobiia, Actinobacteria, Bacteria

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2443..3255
DNA (813bp) protein (271aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase
Tax=RBG_16_Actinobacteria_68_21_curated
PLM4_32_b1_sep16_scaffold_835_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

3269..4315
DNA (1047bp) protein (349aa)
Uncharacterized protein Tax=Pseudomonas sp. HPB0071 RepID=N2IXB5_9PSED bin=16ft_combo_ws3_JS1 species=Pseudomonas sp. HPB0071 genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_32_b1_sep16_scaffold_835_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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4330..5046
DNA (717bp) protein (239aa)
CDP-alcohol phosphatidyltransferase Tax=Anaeromyxobacter RepID=B4UJH8_ANASK bin=16ft_combo_ws3_JS1 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
CDP-alcohol phosphatidyltransferase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_32_b1_sep16_scaffold_835_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

5128..7737
DNA (2610bp) protein (870aa)
Aminopeptidase, putative Tax=Shewanella piezotolerans (strain WP3 / JCM 13877) RepID=B8CP15_SHEPW bin=16ft_combo_ws3_JS1 species=Shewanella piezotolerans genus=Shewanella taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
aminopeptidase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_32_b1_sep16_scaffold_835_8
GWA2_WOR_2_47_8_curated, WOR-2, Bacteria

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7734..9119
DNA (1386bp) protein (462aa)
FAD-dependent pyridine nucleotide-disulphide oxidoreductase Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LRS2_HALO1
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
Tax=GWA2_WOR_2_47_8_curated
PLM4_32_b1_sep16_scaffold_835_9

Not on your lists

9124..10788
DNA (1665bp) protein (555aa)
Uncharacterized protein {ECO:0000313|EMBL:KKN61766.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Amidase bin=GWA2_Ignavibacteria_55_11 species=Spirosoma linguale genus=Spirosoma taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
amidase
PLM4_32_b1_sep16_scaffold_835_10
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

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10930..12207
DNA (1278bp) protein (426aa)
efflux transporter, RND family, MFP subunit bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Glaciecola arctica genus=Glaciecola taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
efflux transporter, RND family, MFP subunit
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
PLM4_32_b1_sep16_scaffold_835_11
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

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12191..12934
DNA (744bp) protein (248aa)
ABC transporter related Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZUN8_OPITP
ABC transporter-like protein
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
PLM4_32_b1_sep16_scaffold_835_12
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

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13158..14270
DNA (1113bp) protein (371aa)
Uncharacterized protein Tax=Glaciecola arctica BSs20135 RepID=K6XGH4_9ALTE bin=16ft_combo_ws3_JS1 species=Glaciecola arctica genus=Glaciecola taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
ABC transporter efflux protein
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
PLM4_32_b1_sep16_scaffold_835_13
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14286..15533
DNA (1248bp) protein (416aa)
Uncharacterized protein Tax=Glaciecola arctica BSs20135 RepID=K6YSS8_9ALTE bin=16ft_combo_ws3_JS1 species=Glaciecola arctica genus=Glaciecola taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
ABC transporter efflux protein
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
PLM4_32_b1_sep16_scaffold_835_14
Terriglobus saanensis, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(15673..16200)
DNA (528bp) protein (176aa)
Uncharacterized protein Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8V825_TERSS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV84007.1}; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4).;"
PLM4_32_b1_sep16_scaffold_835_15
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

16489..17610
DNA (1122bp) protein (374aa)
Cytochrome bd quinol oxidase subunit 1 apoprotein Tax=Holophaga foetida DSM 6591 RepID=H1P1G7_9BACT bin=16ft_combo_ws3_JS1 species=Holophaga foetida genus=Holophaga taxon_order=Holophagales taxon_class=Holophagae phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
cytochrome bd ubiquinol oxidase, subunit I
Cytochrome bd ubiquinol oxidase, subunit I {ECO:0000313|EMBL:AIE86585.1}; species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
PLM4_32_b1_sep16_scaffold_835_16
Rubrobacter radiotolerans, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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17603..18649
DNA (1047bp) protein (349aa)
Cytochrome bd quinol oxidase subunit 2 apoprotein Tax=Holophaga foetida DSM 6591 RepID=H1P1G6_9BACT bin=16ft_combo_ws3_JS1 species=Holophaga foetida genus=Holophaga taxon_order=Holophagales taxon_class=Holophagae phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
cydB: cytochrome d ubiquinol oxidase, subunit II
CydB: cytochrome d ubiquinol oxidase, subunit II {ECO:0000313|EMBL:AHY48350.1}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter radiotolerans.;"
PLM4_32_b1_sep16_scaffold_835_17
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18662..21877)
DNA (3216bp) protein (1072aa)
dnaE; error-prone DNA polymerase (EC:2.7.7.7)
Error-prone DNA polymerase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MF23_9BACT
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM4_32_b1_sep16_scaffold_835_18
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

21900..23258
DNA (1359bp) protein (453aa)
rhlE; ATP-dependent RNA helicase RhlE (EC:3.6.1.-)
Uncharacterized protein Tax=uncultured Aminicenantes bacterium RepID=Q2YZZ9_9BACT
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_32_b1_sep16_scaffold_835_19
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23334..23813
DNA (480bp) protein (160aa)
MarR family transcriptional regulator Tax=Pseudomonas putida RepID=UPI000376A9AA
MarR family transcriptional regulator
MarR family transcriptional regulator {ECO:0000313|EMBL:CEI14153.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
PLM4_32_b1_sep16_scaffold_835_20
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

23876..24769
DNA (894bp) protein (298aa)
putative arsenite S-adenosylmethyltransferase (EC:2.1.1.137)
Methyltransferase type 11 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_32_b1_sep16_scaffold_835_21
Owenweeksia hongkongensis, Owenweeksia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

25068..25823
DNA (756bp) protein (252aa)
Methyltransferase, FkbM family Tax=Owenweeksia hongkongensis (strain DSM 17368 / JCM 12287 / NRRL B-23963) RepID=G8R509_OWEHD
FkbM family methyltransferase
Methyltransferase, FkbM family {ECO:0000313|EMBL:AEV34323.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Owenweeksia.;" source="Owenweeksia hongkongensis (strain DSM 17368 / JCM 12287 / NRRL; B-23963).;"
PLM4_32_b1_sep16_scaffold_835_22
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25843..27342)
DNA (1500bp) protein (500aa)
DNA repair nucleotidyltransferase/DNA polymerase-like protein Tax=Thiocapsa marina 5811 RepID=F9U5L4_9GAMM
nucleotidyltransferase/DNA polymerase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM4_32_b1_sep16_scaffold_835_23
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(27350..27679)
DNA (330bp) protein (110aa)
hypothetical protein Tax=Azoarcus toluclasticus RepID=UPI0003731F18
RNA methyltransferase TrmH, group 3
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_32_b1_sep16_scaffold_835_24
Thioflavicoccus mobilis, Thioflavicoccus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27689..28438)
DNA (750bp) protein (250aa)
RecA/RadA recombinase Tax=Thioflavicoccus mobilis 8321 RepID=L0GYK7_9GAMM
recombinase A
RecA/RadA recombinase {ECO:0000313|EMBL:AGA90399.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thioflavicoccus.;" source="Thioflavicoccus mobilis 8321.;"
PLM4_32_b1_sep16_scaffold_835_25
Corallococcus coralloides, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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28454..28642
DNA (189bp) protein (63aa)
Uncharacterized protein Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MMU7_CORCM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFE03835.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus.;" source="Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086; / M2) (Myxococcus coralloides).;"
PLM4_32_b1_sep16_scaffold_835_26
Thioflavicoccus mobilis, Thioflavicoccus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28746..29384)
DNA (639bp) protein (213aa)
LexA repressor {ECO:0000256|SAAS:SAAS00008101}; EC=3.4.21.- {ECO:0000256|SAAS:SAAS00273293};; EC=3.4.21.88 {ECO:0000256|SAAS:SAAS00008054};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thioflavicoccus.;" source="Thioflavicoccus mobilis 8321.;"
SOS regulatory protein LexA Tax=Thioflavicoccus mobilis 8321 RepID=L0GYD9_9GAMM
SOS regulatory protein LexA
PLM4_32_b1_sep16_scaffold_835_27
unknown

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29644..30120
DNA (477bp) protein (159aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_835_28
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30227..31783
DNA (1557bp) protein (519aa)
hypothetical protein Tax=Herbaspirillum sp. JC206 RepID=UPI00037D034A
FAD-dependent oxidoreductase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM4_32_b1_sep16_scaffold_835_29
Cesiribacter andamanensis, Cesiribacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

31780..32265
DNA (486bp) protein (162aa)
DinB superfamily protein Tax=Cesiribacter andamanensis AMV16 RepID=M7N077_9BACT
DinB superfamily protein {ECO:0000313|EMBL:EMR02098.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Cesiribacter.;" source="Cesiribacter andamanensis AMV16.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_835_30
RBG_16_Zixibacteria_40_9_curated, Zixibacteria, Bacteria

Not on your lists

32279..32791
DNA (513bp) protein (171aa)
DinB family protein bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
hypothetical protein
Tax=RBG_16_Zixibacteria_40_9_curated
Displaying items 1-30 of 40 in total

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