ggKbase home page

PLM4_65_coex_sep16_scaffold_25

Search features with annotation key words

Displaying items 1-30 of 143 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_25_1
RBG_16_Planctomycetes_55_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(263..2437)
DNA (2175bp) protein (725aa)
Uncharacterized protein bin=GWF2_Planctomycete_41_51 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Planctomycete_41_51 organism_group=Planctomycetes organism_desc=a211
pectate lyase-like protein
Tax=RBG_16_Planctomycetes_55_9_curated
PLM4_65_coex_sep16_scaffold_25_2
RBG_16_Planctomycetes_55_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(2911..5088)
DNA (2178bp) protein (726aa)
Uncharacterized protein bin=GWF2_Planctomycete_41_51 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Planctomycete_41_51 organism_group=Planctomycetes organism_desc=a211
putative glycosyl hydrolase
Tax=RBG_16_Planctomycetes_55_9_curated
PLM4_65_coex_sep16_scaffold_25_3
RBG_16_Planctomycetes_55_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(5388..5858)
DNA (471bp) protein (157aa)
Putative uncharacterized protein bin=GWF2_Planctomycetes_50_10 species=Clostridium cellulovorans genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Planctomycetes_50_10 organism_group=Planctomycetes
hypothetical protein
Tax=RBG_16_Planctomycetes_55_9_curated
PLM4_65_coex_sep16_scaffold_25_4
RBG_13_Planctomycetes_50_24_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

5960..6775
DNA (816bp) protein (272aa)
inositol-phosphate phosphatase (EC:3.1.3.25)
Inositol monophosphatase bin=GWF2_Planctomycetes_42_9 species=Shewanella loihica genus=Shewanella taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Planctomycetes_42_9 organism_group=Planctomycetes
Tax=RBG_13_Planctomycetes_50_24_curated
PLM4_65_coex_sep16_scaffold_25_5
RBG_19FT_COMBO_Planctomycetes_48_8_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(6926..9448)
DNA (2523bp) protein (841aa)
id=3924496 bin=GWF2_Planctomycetes_42_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Planctomycetes_42_9 organism_group=Planctomycetes
Tax=RBG_19FT_COMBO_Planctomycetes_48_8_curated
PLM4_65_coex_sep16_scaffold_25_6
RBG_16_Planctomycetes_55_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(9460..10512)
DNA (1053bp) protein (351aa)
id=3782419 bin=GWF2_Planctomycetes_42_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Planctomycetes_42_9 organism_group=Planctomycetes
Tax=RBG_16_Planctomycetes_55_9_curated
PLM4_65_coex_sep16_scaffold_25_7
RBG_16_Planctomycetes_55_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(10519..11244)
DNA (726bp) protein (242aa)
id=3864552 bin=GWF2_Planctomycetes_42_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Planctomycetes_42_9 organism_group=Planctomycetes
Tax=RBG_16_Planctomycetes_55_9_curated
PLM4_65_coex_sep16_scaffold_25_8
RBG_13_Planctomycetes_50_24_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(11252..12058)
DNA (807bp) protein (269aa)
Prepilin-type N-terminal cleavage/methylation domain-containing protein bin=GWC2_Planctomycetes_45_44 species=Variovorax sp. CF313 genus=Variovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Planctomycetes_45_44 organism_group=Planctomycetes organism_desc=Novel; good
Tax=RBG_13_Planctomycetes_50_24_curated
PLM4_65_coex_sep16_scaffold_25_9
RBG_16_Planctomycetes_55_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(12102..12593)
DNA (492bp) protein (164aa)
Tax=RBG_16_Planctomycetes_55_9_curated
PLM4_65_coex_sep16_scaffold_25_10
RBG_19FT_COMBO_Planctomycetes_48_8_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(12727..13629)
DNA (903bp) protein (301aa)
Putative uncharacterized protein bin=GWF2_Planctomycete_41_51 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Planctomycete_41_51 organism_group=Planctomycetes organism_desc=a211
hypothetical protein
Tax=RBG_19FT_COMBO_Planctomycetes_48_8_curated
PLM4_65_coex_sep16_scaffold_25_11
RBG_13_Planctomycetes_46_10_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(13757..14659)
DNA (903bp) protein (301aa)
Putative uncharacterized protein bin=GWC2_Planctomycetes_45_44 species=Planctomyces limnophilus genus=Planctomyces taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Planctomycetes_45_44 organism_group=Planctomycetes organism_desc=Novel; good
prepilin-type N-terminal cleavage/methylation domain
Tax=RBG_13_Planctomycetes_46_10_curated
PLM4_65_coex_sep16_scaffold_25_12
RBG_13_Planctomycetes_50_24_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(14719..16026)
DNA (1308bp) protein (436aa)
Type IV pilus assembly protein PilC bin=GWF2_Planctomycetes_42_9 species=Phycisphaera mikurensis genus=Phycisphaera taxon_order=Phycisphaerales taxon_class=Phycisphaerae phylum=Planctomycetes tax=GWF2_Planctomycetes_42_9 organism_group=Planctomycetes
pilC; type IV pilus assembly protein PilC
Tax=RBG_13_Planctomycetes_50_24_curated
PLM4_65_coex_sep16_scaffold_25_13
RBG_16_Planctomycetes_55_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(16093..17862)
DNA (1770bp) protein (590aa)
Type IV pilus assembly protein PilB bin=GWF2_Planctomycete_41_51 species=Phycisphaera mikurensis genus=Phycisphaera taxon_order=Phycisphaerales taxon_class=Phycisphaerae phylum=Planctomycetes tax=GWF2_Planctomycete_41_51 organism_group=Planctomycetes organism_desc=a211
pilB; type IV pilus assembly protein PilB
Tax=RBG_16_Planctomycetes_55_9_curated
PLM4_65_coex_sep16_scaffold_25_14
RBG_16_Planctomycetes_55_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(18249..18893)
DNA (645bp) protein (215aa)
id=4430234 bin=GWF2_Planctomycete_41_51 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Planctomycete_41_51 organism_group=Planctomycetes organism_desc=a211
Tax=RBG_16_Planctomycetes_55_9_curated
PLM4_65_coex_sep16_scaffold_25_15
RBG_16_Planctomycetes_55_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(19193..19648)
DNA (456bp) protein (152aa)
id=3029811 bin=GWF2_Planctomycetes_50_10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Planctomycetes_50_10 organism_group=Planctomycetes
Tax=RBG_16_Planctomycetes_55_9_curated
PLM4_65_coex_sep16_scaffold_25_16
RBG_16_Planctomycetes_55_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

19949..21118
DNA (1170bp) protein (390aa)
Twitching motility protein bin=GWF2_Planctomycetes_50_10 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_Planctomycetes_50_10 organism_group=Planctomycetes
pilus retraction protein PilT
Tax=RBG_16_Planctomycetes_55_9_curated
PLM4_65_coex_sep16_scaffold_25_17
RBG_16_Planctomycetes_55_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

21131..22792
DNA (1662bp) protein (554aa)
Type II secretion system protein E bin=GWC2_Planctomycetes_45_44 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Planctomycetes_45_44 organism_group=Planctomycetes organism_desc=Novel; good
type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB
Tax=RBG_16_Planctomycetes_55_9_curated
PLM4_65_coex_sep16_scaffold_25_18
RBG_16_Planctomycetes_55_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

22845..24146
DNA (1302bp) protein (434aa)
Tax=RBG_16_Planctomycetes_55_9_curated
PLM4_65_coex_sep16_scaffold_25_19
RBG_13_Planctomycetes_44_8b_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(24338..24487)
DNA (150bp) protein (50aa)
id=3813907 bin=GWF2_Planctomycetes_50_10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Planctomycetes_50_10 organism_group=Planctomycetes
Tax=RBG_13_Planctomycetes_44_8b_curated
PLM4_65_coex_sep16_scaffold_25_20
RBG_13_Planctomycetes_50_24_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

24916..26133
DNA (1218bp) protein (406aa)
hypothetical protein Tax=unclassified candidate division KSB1 RepID=UPI00037F42F5
Tax=RBG_13_Planctomycetes_50_24_curated
PLM4_65_coex_sep16_scaffold_25_21
RBG_13_Planctomycetes_50_24_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

26108..26659
DNA (552bp) protein (184aa)
hypothetical protein Tax=unclassified candidate division KSB1 RepID=UPI00037F42F5
Tax=RBG_13_Planctomycetes_50_24_curated
PLM4_65_coex_sep16_scaffold_25_22
GWC2_Planctomycetes_45_44_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

26938..28134
DNA (1197bp) protein (399aa)
id=3923631 bin=GWC2_Planctomycetes_45_44 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Planctomycetes_45_44 organism_group=Planctomycetes organism_desc=Novel; good
Tax=GWC2_Planctomycetes_45_44_curated
PLM4_65_coex_sep16_scaffold_25_23
RifOxyA12_full_Lentisphaerae_48_11_curated, Lentisphaerae, Bacteria

Not on your lists

28274..29464
DNA (1191bp) protein (397aa)
Uncharacterized protein Tax=uncultured Desulfofustis sp. PB-SRB1 RepID=V4J3X0_9DELT
UDP-N-acetylglucosamine 2-epimerase
Tax=RifOxyA12_full_Lentisphaerae_48_11_curated
PLM4_65_coex_sep16_scaffold_25_24
R_RIF_OD1_04_46_16, RIF-OD1-4, Parcubacteria, Bacteria

Not on your lists

29461..30405
DNA (945bp) protein (315aa)
Putative D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding Tax=Desulfovibrio piezophilus (strain DSM 21447 / JCM 15486 / C1TLV30) RepID=M1WKN6_DESPC
putative D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_04_46_16_curated
PLM4_65_coex_sep16_scaffold_25_25
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30406..31227
DNA (822bp) protein (274aa)
general stress protein 14 (GSP14) (EC:1.6.99.-)
Legionaminic acid synthase Tax=Campylobacter concisus ATCC 51562 RepID=U2FA90_9PROT
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM4_65_coex_sep16_scaffold_25_26

Not on your lists

31224..32714
DNA (1491bp) protein (497aa)
hypothetical protein Tax=Aminicenantes RepID=UPI000380EE75
Uncharacterized protein {ECO:0000313|EMBL:KKT93878.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_45_14.;"
hypothetical protein
PLM4_65_coex_sep16_scaffold_25_27
Methanococcus maripaludis, Methanococcus, Methanococcales, Methanococci, Euryarchaeota, Archaea

Not on your lists

32850..33569
DNA (720bp) protein (240aa)
Acylneuraminate cytidylyltransferase Tax=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) RepID=A4FX92_METM5
acylneuraminate cytidylyltransferase
Acylneuraminate cytidylyltransferase {ECO:0000313|EMBL:ABO34821.1}; species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanococcaceae; Methanococcus.;" source="Methanococcus maripaludis (strain C5 / ATCC BAA-1333).;"
PLM4_65_coex_sep16_scaffold_25_28
GWB1_OD1_50_10, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists

33763..34782
DNA (1020bp) protein (340aa)
Uncharacterized protein {ECO:0000313|EMBL:KKW14662.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Jorgensenbacteria) bacterium GW2011_GWB1_50_10.;"
PLM4_65_coex_sep16_scaffold_25_29
R_RIF_OD1_13_60_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

34808..35932
DNA (1125bp) protein (375aa)
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_13_60_25_curated
PLM4_65_coex_sep16_scaffold_25_30
unknown

Not on your lists

36200..36817
DNA (618bp) protein (206aa)

This feature has no annotations

Displaying items 1-30 of 143 in total

View Taxonomy