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PLM4_65_coex_sep16_scaffold_48

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Displaying items 1-30 of 147 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_48_1
RBG_13_Planctomycetes_50_24_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

3..3731
DNA (3729bp) protein (1243aa)
Putative hemagglutinin/hemolysin-related protein Tax=Dickeya dadantii (strain 3937) RepID=E0SBQ1_DICD3
VCBS repeat-containing protein
Tax=RBG_13_Planctomycetes_50_24_curated
PLM4_65_coex_sep16_scaffold_48_trna_1
unknown

Not on your lists

comp(3945..4018)
DNA (74bp)
transferRNA Arg
PLM4_65_coex_sep16_scaffold_48_2
RBG_16_Aminicenantes_63_16_curated, Aminicenantes, Bacteria

Not on your lists

comp(4731..6806)
DNA (2076bp) protein (692aa)
WD-40-like beta propeller repeat-containing protein; K03641 TolB protein bin=RBG_16_Aminicenantes_63_16_plus species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
peptidase S41
Tax=RBG_16_Aminicenantes_63_16_curated
PLM4_65_coex_sep16_scaffold_48_3
RBG_16_Aminicenantes_63_16_curated, Aminicenantes, Bacteria

Not on your lists

comp(7025..7705)
DNA (681bp) protein (227aa)
hypothetical protein Tax=unclassified Aminicenantes RepID=UPI000369F321
two component transcriptional regulator
Tax=RBG_16_Aminicenantes_63_16_curated
PLM4_65_coex_sep16_scaffold_48_4
RBG_16_Aminicenantes_63_16_curated, Aminicenantes, Bacteria

Not on your lists

comp(7707..9839)
DNA (2133bp) protein (711aa)
hypothetical protein Tax=unclassified Aminicenantes RepID=UPI0003789690
OmpR family signal transduction histidine kinase
Tax=RBG_16_Aminicenantes_63_16_curated
PLM4_65_coex_sep16_scaffold_48_5
RBG_13_Planctomycetes_60_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(10451..11344)
DNA (894bp) protein (298aa)
Uncharacterized protein bin=GWF2_Lentisphaerae_50_93 species=unknown genus=Parabacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
metallophosphoesterase
Tax=RBG_13_Planctomycetes_60_9_curated
PLM4_65_coex_sep16_scaffold_48_6

Not on your lists

11773..13548
DNA (1776bp) protein (592aa)
Marine sediment metagenome DNA, contig: S01H1_S30811 {ECO:0000313|EMBL:GAG34376.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM4_65_coex_sep16_scaffold_48_7
RBG_19FT_COMBO_Planctomycetes_48_8_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

13554..14372
DNA (819bp) protein (273aa)
Putative uncharacterized protein bin=GWF2_Lentisphaerae_50_93 species=Planctomyces maris genus=Planctomyces taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
prepilin-type N-terminal cleavage/methylation domain
Tax=RBG_19FT_COMBO_Planctomycetes_48_8_curated
PLM4_65_coex_sep16_scaffold_48_8
RBG_16_Planctomycetes_55_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(14446..15507)
DNA (1062bp) protein (354aa)
Carboxylesterase type B Tax=Cyclobacterium marinum (strain ATCC 25205 / DSM 745) RepID=G0J0G7_CYCMS
carboxylesterase type B
Tax=RBG_16_Planctomycetes_55_9_curated
PLM4_65_coex_sep16_scaffold_48_9
Methanosphaerula palustris, Methanosphaerula, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(15728..17701)
DNA (1974bp) protein (658aa)
UvrD/REP helicase Tax=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) RepID=B8GG53_METPE
UvrD/REP helicase
UvrD/REP helicase {ECO:0000313|EMBL:ACL16127.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanoregulaceae; Methanosphaerula.;" source="Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c).;"
PLM4_65_coex_sep16_scaffold_48_10
uncultured Desulfobacterium sp., Desulfobacterium, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17691..19574)
DNA (1884bp) protein (628aa)
Putative uncharacterized protein Tax=uncultured Desulfobacterium sp. RepID=E1Y9V6_9DELT
Putative uncharacterized protein {ECO:0000313|EMBL:CBX27350.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfobacterium; environmental samples.;" source="uncultured Desulfobacterium sp.;"
SMC domain-containing protein
PLM4_65_coex_sep16_scaffold_48_11
RBG_19FT_COMBO_Planctomycetes_48_8_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(20099..20884)
DNA (786bp) protein (262aa)
RNA polymerase sigma factor bin=GWF2_Planctomycetes_42_9 species=Pirellula staleyi genus=Pirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_Planctomycetes_42_9 organism_group=Planctomycetes
fliA; RNA polymerase sigma factor for flagellar operon
Tax=RBG_19FT_COMBO_Planctomycetes_48_8_curated
PLM4_65_coex_sep16_scaffold_48_12
RBG_19FT_COMBO_Planctomycetes_48_8_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(21243..21659)
DNA (417bp) protein (139aa)
id=4240497 bin=GWC2_Planctomycetes_45_44 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Planctomycetes_45_44 organism_group=Planctomycetes organism_desc=Novel; good
Tax=RBG_19FT_COMBO_Planctomycetes_48_8_curated
PLM4_65_coex_sep16_scaffold_48_13
RBG_19FT_COMBO_Planctomycetes_48_8_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(21885..22190)
DNA (306bp) protein (102aa)
Transcriptional regulator, MerR family bin=GWF2_Planctomycetes_50_10 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Planctomycetes_50_10 organism_group=Planctomycetes
MerR family transcriptional regulator
Tax=RBG_19FT_COMBO_Planctomycetes_48_8_curated
PLM4_65_coex_sep16_scaffold_48_14
RBG_13_Planctomycetes_46_10_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

23076..24152
DNA (1077bp) protein (359aa)
Diguanylate cyclase bin=GWF2_Planctomycetes_50_10 species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWF2_Planctomycetes_50_10 organism_group=Planctomycetes
GAF sensor-containing diguanylate cyclase
Tax=RBG_13_Planctomycetes_46_10_curated
PLM4_65_coex_sep16_scaffold_48_15
RBG_13_Planctomycetes_50_24_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

24539..27769
DNA (3231bp) protein (1077aa)
PA14 domain protein Tax=Pedosphaera parvula Ellin514 RepID=B9XL26_9BACT
PA14 domain-containing protein
Tax=RBG_13_Planctomycetes_50_24_curated
PLM4_65_coex_sep16_scaffold_48_16
RBG_19FT_COMBO_Planctomycetes_48_8_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(28387..28962)
DNA (576bp) protein (192aa)
id=3866399 bin=GWF2_Planctomycete_41_51 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Planctomycete_41_51 organism_group=Planctomycetes organism_desc=a211
Tax=RBG_19FT_COMBO_Planctomycetes_48_8_curated
PLM4_65_coex_sep16_scaffold_48_17
RBG_16_Planctomycetes_55_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(29012..29278)
DNA (267bp) protein (89aa)
Tax=RBG_16_Planctomycetes_55_9_curated
PLM4_65_coex_sep16_scaffold_48_18
RBG_16_Planctomycetes_55_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(29509..29799)
DNA (291bp) protein (97aa)
Putative uncharacterized protein bin=GWC2_Planctomycetes_45_44 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWC2_Planctomycetes_45_44 organism_group=Planctomycetes organism_desc=Novel; good
hypothetical protein
Tax=RBG_16_Planctomycetes_55_9_curated
PLM4_65_coex_sep16_scaffold_48_19

Not on your lists

comp(30050..30844)
DNA (795bp) protein (265aa)
Marine sediment metagenome DNA, contig: S12H4_C05105 {ECO:0000313|EMBL:GAI75395.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Putative uncharacterized protein bin=GWC2_Planctomycetes_45_44 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWC2_Planctomycetes_45_44 organism_group=Planctomycetes organism_desc=Novel; good
hypothetical protein
PLM4_65_coex_sep16_scaffold_48_20
RBG_19FT_COMBO_Planctomycetes_48_8_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

31234..31752
DNA (519bp) protein (173aa)
Uncharacterized protein Tax=Bacteroides ovatus CL03T12C18 RepID=I9I0Z0_BACOV
acetyltransferase (isoleucine patch superfamily)
Tax=RBG_19FT_COMBO_Planctomycetes_48_8_curated
PLM4_65_coex_sep16_scaffold_48_21
RBG_19FT_COMBO_Planctomycetes_48_8_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

31797..32657
DNA (861bp) protein (287aa)
Putative uncharacterized protein Tax=Robiginitalea biformata (strain ATCC BAA-864 / HTCC2501 / KCTC 12146) RepID=A4CMM5_ROBBH
hypothetical protein
Tax=RBG_19FT_COMBO_Planctomycetes_48_8_curated
PLM4_65_coex_sep16_scaffold_48_22
RBG_13_Planctomycetes_50_24_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(32704..33888)
DNA (1185bp) protein (395aa)
2-amino-3-ketobutyrate coenzyme A ligase (EC:2.3.1.29)
2-amino-3-ketobutyrate coenzyme A ligase Tax=Pedosphaera parvula Ellin514 RepID=B9XQL4_9BACT
Tax=RBG_13_Planctomycetes_50_24_curated
PLM4_65_coex_sep16_scaffold_48_23
RBG_19FT_COMBO_Planctomycetes_48_8_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(34114..35142)
DNA (1029bp) protein (343aa)
L-threonine 3-dehydrogenase (EC:1.1.1.103)
L-threonine 3-dehydrogenase Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4CBE3_DESTA
Tax=RBG_19FT_COMBO_Planctomycetes_48_8_curated
PLM4_65_coex_sep16_scaffold_48_24
RBG_19FT_COMBO_Planctomycetes_48_8_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(35203..35997)
DNA (795bp) protein (265aa)
5'-nucleotidase SurE bin=GWF2_Planctomycete_41_51 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_Planctomycete_41_51 organism_group=Planctomycetes organism_desc=a211
5''/3''-nucleotidase SurE
Tax=RBG_19FT_COMBO_Planctomycetes_48_8_curated
PLM4_65_coex_sep16_scaffold_48_25
RBG_13_Planctomycetes_50_24_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

36130..36783
DNA (654bp) protein (218aa)
Carbohydrate kinase bin=GWF2_Planctomycetes_50_10 species=uncultured bacterium W5-15b genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Planctomycetes_50_10 organism_group=Planctomycetes
yjeF-like protein, hydroxyethylthiazole kinase-related protein
Tax=RBG_13_Planctomycetes_50_24_curated
PLM4_65_coex_sep16_scaffold_48_26
RBG_13_Planctomycetes_50_24_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(36780..38219)
DNA (1440bp) protein (480aa)
Uncharacterized protein bin=GWC2_Planctomycetes_45_44 species=Phycisphaera mikurensis genus=Phycisphaera taxon_order=Phycisphaerales taxon_class=Phycisphaerae phylum=Planctomycetes tax=GWC2_Planctomycetes_45_44 organism_group=Planctomycetes organism_desc=Novel; good
hypothetical protein
Tax=RBG_13_Planctomycetes_50_24_curated
PLM4_65_coex_sep16_scaffold_48_27
RBG_19FT_COMBO_Planctomycetes_48_8_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(38400..39086)
DNA (687bp) protein (229aa)
HAD-superfamily hydrolase, subfamily IA, variant 1 bin=GWF2_Planctomycetes_42_9 species=Bacillus cereus genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Planctomycetes_42_9 organism_group=Planctomycetes
HAD-superfamily hydrolase, subfamily IA, variant 1
Tax=RBG_19FT_COMBO_Planctomycetes_48_8_curated
PLM4_65_coex_sep16_scaffold_48_28
RBG_19FT_COMBO_Planctomycetes_48_8_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

39417..40319
DNA (903bp) protein (301aa)
ubiA1; prenyltransferase UbiA (EC:2.5.1.-)
UbiA prenyltransferase bin=GWF2_Planctomycetes_50_10 species=Clostridium thermocellum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Planctomycetes_50_10 organism_group=Planctomycetes
Tax=RBG_19FT_COMBO_Planctomycetes_48_8_curated
PLM4_65_coex_sep16_scaffold_48_29
RBG_19FT_COMBO_Planctomycetes_48_8_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

40513..41232
DNA (720bp) protein (240aa)
ribosomal large subunit pseudouridine synthase B (EC:5.4.99.-)
Pseudouridine synthase bin=GWF2_Planctomycete_41_51 species=Pirellula staleyi genus=Pirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_Planctomycete_41_51 organism_group=Planctomycetes organism_desc=a211
Tax=RBG_19FT_COMBO_Planctomycetes_48_8_curated
Displaying items 1-30 of 147 in total

View Taxonomy