ggKbase home page

PLM4_65_coex_sep16_scaffold_250

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_250_1
RBG_16_Planctomycetes_55_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

827..1417
DNA (591bp) protein (197aa)
Two-component system, LuxR family, response regulator Tax=endosymbiont of unidentified scaly snail isolate Monju RepID=S6BYY3_9GAMM
two component LuxR family transcriptional regulator
Tax=RBG_16_Planctomycetes_55_9_curated
PLM4_65_coex_sep16_scaffold_250_2
RBG_13_Planctomycetes_46_10_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

1578..2693
DNA (1116bp) protein (372aa)
Tax=RBG_13_Planctomycetes_46_10_curated
PLM4_65_coex_sep16_scaffold_250_3
unknown

Not on your lists

2808..3131
DNA (324bp) protein (108aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_250_4
RBG_13_Planctomycetes_46_10_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

3399..5123
DNA (1725bp) protein (575aa)
hypothetical protein Tax=Lamprocystis purpurea RepID=UPI0003640C1C
gelD; periplasmic protein involved in polysaccharide export
Tax=RBG_13_Planctomycetes_46_10_curated
PLM4_65_coex_sep16_scaffold_250_5
RBG_13_Planctomycetes_46_10_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

5170..7350
DNA (2181bp) protein (727aa)
capsular exopolysaccharide family protein (EC:2.7.10.2)
Polysaccharide chain length determinant protein and protein tyrosine kinase bin=GWC2_CP_Nitrospirae-rel_42_7 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
Tax=RBG_13_Planctomycetes_46_10_curated
PLM4_65_coex_sep16_scaffold_250_6
RBG_13_Planctomycetes_46_10_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

7394..8224
DNA (831bp) protein (277aa)
ptpZ; phosphotyrosine protein phosphatase (EC:3.1.3.48)
Protein-tyrosine-phosphatase Tax=Thiocapsa marina 5811 RepID=F9U643_9GAMM
Tax=RBG_13_Planctomycetes_46_10_curated
PLM4_65_coex_sep16_scaffold_250_7
RBG_13_Planctomycetes_46_10_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

8221..10752
DNA (2532bp) protein (844aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MIN7_9BACT
membrane protein
Tax=RBG_13_Planctomycetes_46_10_curated
PLM4_65_coex_sep16_scaffold_250_8
RBG_13_Planctomycetes_46_10_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

10885..12336
DNA (1452bp) protein (484aa)
Membrane protein containing Glycosyl transferase, group 1 domain protein Tax=Rhodopirellula maiorica SM1 RepID=M5R874_9PLAN
glycosyl transferase family protein
Tax=RBG_13_Planctomycetes_46_10_curated
PLM4_65_coex_sep16_scaffold_250_9
BJP_IG2102_Syntrophobacterales_60_12, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12395..13759
DNA (1365bp) protein (455aa)
Membrane protein involved in the export of O-antigen and teichoic acid Tax=Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1) RepID=M1NFB9_DESSD
membrane protein involved in the export of O-antigen and teichoic acid
Tax=BJP_IG2102_Syntrophobacterales_60_12
PLM4_65_coex_sep16_scaffold_250_10
Chryseobacterium oranimense, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

13801..15555
DNA (1755bp) protein (585aa)
Uncharacterized protein {ECO:0000313|EMBL:CEJ68293.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium oranimense G311.;"
HAD-superfamily phosphatase subfamily IIIC bin=GWF2_Bacteroidetes_41_31 species=unknown genus=Bacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_41_31 organism_group=Bacteroidetes
FkbH domain-containing protein
PLM4_65_coex_sep16_scaffold_250_11
RLO_Nitrospinae_45_22, Nitrospinae, Bacteria

Not on your lists

15652..16758
DNA (1107bp) protein (369aa)
hgdB1; protein HgdB1 (EC:4.2.1.-)
hypothetical protein Tax=Hydrogenedentes bacterium JGI 0000039-J10 RepID=UPI00037ADFB7
Tax=RIFCSPLOWO2_12_FULL_Nitrospinae_45_22_curated
PLM4_65_coex_sep16_scaffold_250_12
RLO_Nitrospinae_45_22, Nitrospinae, Bacteria

Not on your lists

16790..17929
DNA (1140bp) protein (380aa)
2-hydroxyglutaryl-CoA dehydratase Tax=Desulfitobacterium hafniense RepID=UPI0003731592
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Nitrospinae_45_22_curated
PLM4_65_coex_sep16_scaffold_250_13
Methanosphaerula palustris, Methanosphaerula, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

17926..18735
DNA (810bp) protein (270aa)
CoA-substrate-specific enzyme activase Tax=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) RepID=B8GH86_METPE
CoA-substrate-specific enzyme activase
CoA-substrate-specific enzyme activase {ECO:0000313|EMBL:ACL16491.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanoregulaceae; Methanosphaerula.;" source="Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c).;"
PLM4_65_coex_sep16_scaffold_250_14
GWF2_Bacteroidetes_41_31_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18989..19225
DNA (237bp) protein (79aa)
Acyl carrier protein bin=GWF2_Bacteroidetes_41_31 species=Prevotella marshii genus=Prevotella taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_41_31 organism_group=Bacteroidetes
uncharacterized protein
Tax=GWF2_Bacteroidetes_41_31_curated
PLM4_65_coex_sep16_scaffold_250_15
Prevotella sp. CAG:1058, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19320..21128
DNA (1809bp) protein (603aa)
4Fe-4S ferredoxin Tax=Aminicenantes bacterium SCGC AAA252-K06 RepID=UPI0003B65634
4Fe-4S binding domain protein {ECO:0000313|EMBL:CCX67660.1}; species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella sp. CAG:1058.;"
putative dehydrogenase
PLM4_65_coex_sep16_scaffold_250_16
unknown

Not on your lists

comp(21185..21451)
DNA (267bp) protein (89aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_250_17
RBG_13_Planctomycetes_60_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

21537..22076
DNA (540bp) protein (180aa)
4Fe-4S binding domain protein Tax=Bacteroides RepID=C3R5B3_9BACE
hypothetical protein
Tax=RBG_13_Planctomycetes_60_9_curated
PLM4_65_coex_sep16_scaffold_250_18
Methanosarcina siciliae, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

22122..23339
DNA (1218bp) protein (406aa)
Polysaccharide pyruvyl transferase Tax=Methanosaeta thermophila (strain DSM 6194 / PT) RepID=A0B7S4_METTP
Uncharacterized protein {ECO:0000313|EMBL:AKB30473.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina siciliae T4/M.;"
hypothetical protein
PLM4_65_coex_sep16_scaffold_250_19
Methanosarcina lacustris, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

23361..24377
DNA (1017bp) protein (339aa)
Glycosyltransferase (EC:2.4.1.-)
Glycosyltransferase {ECO:0000313|EMBL:AKB76277.1}; EC=2.4.1.- {ECO:0000313|EMBL:AKB76277.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina lacustris Z-7289.;"
Glycosyl transferase family 2 Tax=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) RepID=B8GGD7_METPE
PLM4_65_coex_sep16_scaffold_250_20
Pelosinus sp. UFO1, Pelosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

24472..25293
DNA (822bp) protein (274aa)
Glycosyl transferase family 2 Tax=Crinalium epipsammum PCC 9333 RepID=K9VVT7_9CYAN
polysaccharide deacetylase
Polysaccharide deacetylase {ECO:0000313|EMBL:AIF52072.1}; species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Pelosinus.;" source="Pelosinus sp. UFO1.;"
PLM4_65_coex_sep16_scaffold_250_21
Methanosarcina mazei, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

25500..26462
DNA (963bp) protein (321aa)
Glycosyltransferase (EC:2.4.1.-)
hypothetical protein Tax=Bacteria RepID=UPI0003671A1D
Uncharacterized protein {ECO:0000313|EMBL:KKG75481.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina mazei (Methanosarcina frisia).;"
PLM4_65_coex_sep16_scaffold_250_22
Bacteroides clarus CAG:160, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

26631..27695
DNA (1065bp) protein (355aa)
Uncharacterized protein Tax=Bacteroides clarus CAG:160 RepID=R6MBD4_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CDB83292.1}; species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides clarus CAG:160.;"
putative xylanase/chitin deacetylase
PLM4_65_coex_sep16_scaffold_250_23
unknown

Not on your lists

27952..29232
DNA (1281bp) protein (427aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_250_24
RBG_13_Planctomycetes_46_10_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

29210..30394
DNA (1185bp) protein (395aa)
Putative uncharacterized protein Tax=sediment metagenome RepID=D9PHX7_9ZZZZ
hypothetical protein
Tax=RBG_13_Planctomycetes_46_10_curated
PLM4_65_coex_sep16_scaffold_250_25
RBG_13_Planctomycetes_46_10_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

30465..31937
DNA (1473bp) protein (491aa)
Radical SAM domain-containing protein Tax=Methanobacterium sp. MB1 RepID=U6EE10_9EURY
Radical SAM domain-containing protein
Tax=RBG_13_Planctomycetes_46_10_curated
PLM4_65_coex_sep16_scaffold_250_26
RBG_13_Planctomycetes_46_10_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

32096..33292
DNA (1197bp) protein (399aa)
hypothetical protein Tax=Latescibacteria bacterium SCGC AAA252-D10 RepID=UPI00037CBA1B
lipopolysaccharide N-acetylglucosaminyltransferase
Tax=RBG_13_Planctomycetes_46_10_curated
PLM4_65_coex_sep16_scaffold_250_27
CG_Arma_01, Armatimonadetes, Bacteria

Not on your lists

33393..35651
DNA (2259bp) protein (753aa)
hypothetical protein Tax=unclassified candidate division EM 19 RepID=UPI00037B858C
hypothetical protein
Tax=CG_Arma_01
PLM4_65_coex_sep16_scaffold_250_28
RBG_13_Planctomycetes_46_10_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

35983..36810
DNA (828bp) protein (276aa)
Glycosyl transferase, WecB/TagA/CpsF family bin=GWB2_Chloroflexi_54_36 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=GWB2_Chloroflexi_54_36 organism_group=Chloroflexi organism_desc=a81
WecB/TagA/CpsF family glycosyl transferase
Tax=RBG_13_Planctomycetes_46_10_curated
PLM4_65_coex_sep16_scaffold_250_29
RBG_19FT_COMBO_Actinobacteria_36_27_curated, Actinobacteria, Bacteria

Not on your lists

36983..38362
DNA (1380bp) protein (460aa)
2-methylthioadenine synthetase Tax=Thermoplasmatales archaeon SCGC AB-540-F20 RepID=M7U947_9EURY
2-methylthioadenine synthetase
Tax=RBG_19FT_COMBO_Actinobacteria_36_27_curated
PLM4_65_coex_sep16_scaffold_250_30
RBG_13_Planctomycetes_46_10_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

38304..39326
DNA (1023bp) protein (341aa)
GDP-mannose 4,6-dehydratase (EC:4.2.1.47)
GDP-mannose 4,6-dehydratase Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SKN5_RHOMR
Tax=RBG_13_Planctomycetes_46_10_curated
Displaying items 1-30 of 32 in total

View Taxonomy