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PLM4_65_coex_sep16_scaffold_1710

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_1710_1
R_OD1_Yanofskybacteria_41_11, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(2..1009)
DNA (1008bp) protein (336aa)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
UDP-N-acetylmuramyl-tripeptide synthetase
Tax=RIFCSPHIGHO2_02_FULL_OD1_Yanofskybacteria_41_11_curated
PLM4_65_coex_sep16_scaffold_1710_2
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(1011..1880)
DNA (870bp) protein (290aa)
Methicillin resistance protein bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
femA; protein FemA
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
PLM4_65_coex_sep16_scaffold_1710_3
R_OD1_Yanofskybacteria_43_22, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(1908..2387)
DNA (480bp) protein (160aa)
Holliday junction ATP-dependent DNA helicase RuvA bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
ruvA; Holliday junction DNA helicase RuvA
Tax=RIFCSPHIGHO2_02_FULL_OD1_Yanofskybacteria_43_22_curated
PLM4_65_coex_sep16_scaffold_1710_4
R_OD1_Yanofskybacteria_41_34, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

2571..4208
DNA (1638bp) protein (546aa)
UvrABC system protein B bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
excinuclease ABC subunit B
Tax=RIFCSPLOWO2_01_FULL_OD1_Yanofskybacteria_41_34_curated
PLM4_65_coex_sep16_scaffold_1710_5
R_OD1_Yanofskybacteria_43_32, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

4184..4546
DNA (363bp) protein (121aa)
UvrABC system protein B bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
excinuclease ABC subunit B
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_43_32_curated
PLM4_65_coex_sep16_scaffold_1710_6
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists


4604..4864
DNA (261bp) protein (87aa)
30S ribosomal protein S20; K02968 small subunit ribosomal protein S20 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
SSU ribosomal protein S20P
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
PLM4_65_coex_sep16_scaffold_1710_7
R_OD1_Yanofskybacteria_42_49, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(4890..5963)
DNA (1074bp) protein (358aa)
Stage V sporulation protein E bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
stage V sporulation protein E
Tax=RIFCSPLOWO2_01_FULL_OD1_Yanofskybacteria_42_49_curated
PLM4_65_coex_sep16_scaffold_1710_8
R_OD1_Yanofskybacteria_41_29, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(5979..7064)
DNA (1086bp) protein (362aa)
Phospho-N-acetylmuramoyl-pentapeptide-transferase bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_OD1_Yanofskybacteria_41_29_curated
PLM4_65_coex_sep16_scaffold_1710_9
R_OD1_Yanofskybacteria_43_32, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(7069..7992)
DNA (924bp) protein (308aa)
dacB1; D-alanyl-D-alanine carboxypeptidase DacB (EC:3.4.16.4)
Protein containing Peptidase S11, D-alanyl-D-alanine carboxypeptidase A domain bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_43_32_curated
PLM4_65_coex_sep16_scaffold_1710_10
R_OD1_Yanofskybacteria_41_11, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists


comp(7995..9434)
DNA (1440bp) protein (480aa)
Aspartyl-tRNA synthetase bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
aspartyl-tRNA synthetase
Tax=RIFCSPHIGHO2_02_FULL_OD1_Yanofskybacteria_41_11_curated
PLM4_65_coex_sep16_scaffold_1710_trna_1
unknown

Not on your lists

comp(9603..9675)
DNA (73bp)
transferRNA Lys
PLM4_65_coex_sep16_scaffold_1710_11
R_OD1_Yanofskybacteria_41_34, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(9746..11407)
DNA (1662bp) protein (554aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_Yanofskybacteria_41_34_curated
PLM4_65_coex_sep16_scaffold_1710_12
unknown

Not on your lists

comp(11400..11825)
DNA (426bp) protein (142aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_1710_13
RIFOXYC2_FULL_OD1_Campbellbacteria_35_25_curated, Campbellbacteria, Parcubacteria, Bacteria

Not on your lists

12155..12376
DNA (222bp) protein (74aa)
Uncharacterized protein Tax=Frankia sp. QA3 RepID=I8QQ82_9ACTO
hypothetical protein
Tax=RIFOXYC2_FULL_OD1_Campbellbacteria_35_25_curated
PLM4_65_coex_sep16_scaffold_1710_14
GWD1_OD1_35_49, Campbellbacteria, Parcubacteria, Bacteria

Not on your lists

12447..12929
DNA (483bp) protein (161aa)
alpha/beta-Hydrolases bin=OD1_GWC2_34_28 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
Uncharacterized protein {ECO:0000313|EMBL:KKP78894.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Campbellbacteria) bacterium GW2011_GWD1_35_49.;"
PLM4_65_coex_sep16_scaffold_1710_15
unknown

Not on your lists

comp(13116..13583)
DNA (468bp) protein (156aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_1710_16
R_OD1_Yanofskybacteria_45_18, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(13755..15341)
DNA (1587bp) protein (529aa)
hypothetical protein Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00036AD766
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_OD1_Yanofskybacteria_45_18_curated
PLM4_65_coex_sep16_scaffold_1710_17
R_OD1_Yanofskybacteria_44_17, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(15399..16700)
DNA (1302bp) protein (434aa)
hypothetical protein Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI000370BA21
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_17_curated
PLM4_65_coex_sep16_scaffold_1710_18
R_OD1_Yanofskybacteria_41_34, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(16835..17878)
DNA (1044bp) protein (348aa)
transcription initiation factor sigma 70 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_OD1_Yanofskybacteria_41_34_curated
PLM4_65_coex_sep16_scaffold_1710_19
R_OD1_Yanofskybacteria_43_42, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(18229..18720)
DNA (492bp) protein (164aa)
Protein translocase subunit SecF bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
protein-export membrane protein SecF
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_43_42_curated
PLM4_65_coex_sep16_scaffold_1710_20
GWC2_OD1_41_9, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(19206..20534)
DNA (1329bp) protein (443aa)
Preprotein translocase subunit SecD {ECO:0000313|EMBL:KKS27060.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Yanofskybacteria) bacterium GW2011_GWC2_41_9.;"
Preprotein translocase subunit SecD bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
protein-export membrane protein SecD
PLM4_65_coex_sep16_scaffold_1710_21
GWA2_OD1_41_22_partial, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(20931..22295)
DNA (1365bp) protein (455aa)
Recombinase B {ECO:0000313|EMBL:KKS01166.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Yanofskybacteria) bacterium GW2011_GWA2_41_22.;"
All3209 protein bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
recombinase B
PLM4_65_coex_sep16_scaffold_1710_22
GWA1_OD1_39_13_partial, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(22295..23305)
DNA (1011bp) protein (337aa)
Retron-type reverse transcriptase {ECO:0000313|EMBL:KKR02389.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Yanofskybacteria) bacterium GW2011_GWA1_39_13.;"
RNA-directed DNA polymerase bin=GWF2_Firmicute_51_9 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWF2_Firmicute_51_9 organism_group=Firmicute
RNA-directed DNA polymerase
PLM4_65_coex_sep16_scaffold_1710_23
R_OD1_56_20, Parcubacteria, Bacteria

Not on your lists

23335..23676
DNA (342bp) protein (114aa)
hypothetical protein Tax=Parcubacteria bacterium SCGC AAA011-N16 RepID=UPI0003B5F6BC
Tax=RIFCSPLOWO2_01_FULL_OD1_56_20_curated
PLM4_65_coex_sep16_scaffold_1710_24
GWA1_OD1_39_13_partial, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(23669..23851)
DNA (183bp) protein (61aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR02391.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Yanofskybacteria) bacterium GW2011_GWA1_39_13.;"
PLM4_65_coex_sep16_scaffold_1710_25
R_OD1_Yanofskybacteria_43_42, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(24177..24812)
DNA (636bp) protein (212aa)
seg 187..199 bin=ACD8 species=ACD8 genus=ACD8 taxon_order=ACD8 taxon_class=ACD8 phylum=OD1-i tax=ACD8 organism_group=OD1-i organism_desc=OD1-i
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_43_42_curated
PLM4_65_coex_sep16_scaffold_1710_26
R_OD1_Yanofskybacteria_44_22, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(25024..25743)
DNA (720bp) protein (240aa)
Putative uncharacterized protein bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_22_curated
PLM4_65_coex_sep16_scaffold_1710_27
R_OD1_48_18, Parcubacteria, Bacteria

Not on your lists

comp(25733..26389)
DNA (657bp) protein (219aa)
UPI0003CFF722 related cluster Tax=unknown RepID=UPI0003CFF722
phage SPO1 DNA polymerase-related protein
Tax=RIFCSPLOWO2_01_FULL_OD1_48_18_curated
PLM4_65_coex_sep16_scaffold_1710_28
R_OD1_Yanofskybacteria_43_32, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(26379..27458)
DNA (1080bp) protein (360aa)
Protein translocase subunit SecA bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
Preprotein translocase subunit SecA
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_43_32_curated
Displaying 29 items

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