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PLM4_65_coex_sep16_scaffold_1743

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_1743_1
unknown

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3..110
DNA (108bp) protein (36aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_1743_2
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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143..745
DNA (603bp) protein (201aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GF73_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ26078.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_1743_3
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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742..1041
DNA (300bp) protein (100aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GF73_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ26078.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_1743_4
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1104..2522)
DNA (1419bp) protein (473aa)
ParA family protein Tax=Geobacter metallireducens RepID=Q39UJ6_GEOMG
ParA family protein
ParA family protein {ECO:0000313|EMBL:ABB32078.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
PLM4_65_coex_sep16_scaffold_1743_5
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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2714..4054
DNA (1341bp) protein (447aa)
xseA; exodeoxyribonuclease VII large subunit (EC:3.1.11.6)
Exodeoxyribonuclease 7 large subunit {ECO:0000255|HAMAP-Rule:MF_00378}; EC=3.1.11.6 {ECO:0000255|HAMAP-Rule:MF_00378};; Exodeoxyribonuclease VII large subunit {ECO:0000255|HAMAP-Rule:MF_00378}; Short=Exonuclease VII large subunit {ECO:0000255|HAMAP-Rule:MF_00378};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Exodeoxyribonuclease 7 large subunit Tax=Geobacter uraniireducens (strain Rf4) RepID=EX7L_GEOUR
PLM4_65_coex_sep16_scaffold_1743_6
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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4169..4399
DNA (231bp) protein (77aa)
Exodeoxyribonuclease 7 small subunit {ECO:0000255|HAMAP-Rule:MF_00337}; EC=3.1.11.6 {ECO:0000255|HAMAP-Rule:MF_00337};; Exodeoxyribonuclease VII small subunit {ECO:0000255|HAMAP-Rule:MF_00337}; Short=Exonuclease VII small subunit {ECO:0000255|HAMAP-Rule:MF_00337};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Exodeoxyribonuclease 7 small subunit Tax=Geobacter uraniireducens (strain Rf4) RepID=EX7S_GEOUR
exodeoxyribonuclease VII small subunit
PLM4_65_coex_sep16_scaffold_1743_7
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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4515..5408
DNA (894bp) protein (298aa)
Farnesyl-diphosphate synthase {ECO:0000313|EMBL:ABQ26363.1}; EC=2.5.1.10 {ECO:0000313|EMBL:ABQ26363.1};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Farnesyl-diphosphate synthase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G3J5_GEOUR
polyprenyl synthetase
PLM4_65_coex_sep16_scaffold_1743_8
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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5421..6098
DNA (678bp) protein (226aa)
1-deoxy-D-xylulose-5-phosphate synthase Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M0X6_GEODF
1-deoxy-D-xylulose-5-phosphate synthase
Tax=GWC2_Geobacteraceae_58_44_curated
PLM4_65_coex_sep16_scaffold_1743_9
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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6044..7309
DNA (1266bp) protein (422aa)
1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00021618}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
1-deoxy-D-xylulose-5-phosphate synthase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G3J4_GEOUR
PLM4_65_coex_sep16_scaffold_1743_10
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(7601..8197)
DNA (597bp) protein (199aa)
Tax=GWC2_Geobacteraceae_58_44_curated
PLM4_65_coex_sep16_scaffold_1743_11
Pelobacter propionicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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8636..9394
DNA (759bp) protein (253aa)
Transcriptional regulator, Crp/Fnr family Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1AQ27_PELPD
Crp/FNR family transcriptional regulator
Transcriptional regulator, Crp/Fnr family {ECO:0000313|EMBL:ABK99447.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter propionicus (strain DSM 2379).;"
PLM4_65_coex_sep16_scaffold_1743_12
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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9442..10860
DNA (1419bp) protein (473aa)
O-acetylhomoserine/O-acetylserine sulfhydrylase bin=GWB2_Desulfobacterales_56_26 species=unknown genus=Thioalkalimicrobium taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWB2_Desulfobacterales_56_26 organism_group=Deltaproteobacteria organism_desc=Good
hypothetical protein
Tax=GWC2_Geobacteraceae_58_44_curated
PLM4_65_coex_sep16_scaffold_1743_13
GWA2_Bdellovibrionales_49_15_curated, Bacteroivoracaceae, Bdellovibrionales, Bdellovibrio, Bacteria

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comp(11028..12395)
DNA (1368bp) protein (456aa)
Amino acid transporter bin=GWA2__Bacteriovorax-rel_49_15 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2__Bacteriovorax-rel_49_15 organism_group=Deltaproteobacteria
amino acid transporter
Tax=GWA2_Bdellovibrionales_49_15_curated
PLM4_65_coex_sep16_scaffold_1743_14
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

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comp(12652..13971)
DNA (1320bp) protein (440aa)
D-alanyl-D-alanine dipeptidase {ECO:0000256|HAMAP-Rule:MF_01924, ECO:0000256|PIRNR:PIRNR026671}; Short=D-Ala-D-Ala dipeptidase {ECO:0000256|HAMAP-Rule:MF_01924, ECO:0000256|PIRNR:PIRNR026671};; EC=3.4.13.22 {ECO:0000256|HAMAP-Rule:MF_01924, ECO:0000256|PIRNR:PIRNR026671};; species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
Gll0911 protein bin=GWC2_Nitrospirae-rel_56_14 species=Gloeobacter violaceus genus=Gloeobacter taxon_order=Gloeobacterales taxon_class=Gloeobacteria phylum=Cyanobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
peptidase M15D vanX D-ala-D-ala dipeptidase
PLM4_65_coex_sep16_scaffold_1743_15
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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14298..14729
DNA (432bp) protein (144aa)
putative signal-transduction protein with CBS domains (EC:1.1.1.205)
Uncharacterized protein Tax=Xanthomonas translucens pv. graminis ART-Xtg29 RepID=K8Z403_XANCT
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_coex_sep16_scaffold_1743_16
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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15063..15308
DNA (246bp) protein (82aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G8P8_GEOUR
Uncharacterized protein {ECO:0000313|EMBL:GAM10763.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
hypothetical protein
PLM4_65_coex_sep16_scaffold_1743_17
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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15406..15702
DNA (297bp) protein (99aa)
Uncharacterized protein Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1AQB0_PELPD
Uncharacterized protein {ECO:0000313|EMBL:GAM10764.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
hypothetical protein
PLM4_65_coex_sep16_scaffold_1743_18
BJP_08E140C01_Syntrophobacterales_43_19, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(16151..17524)
DNA (1374bp) protein (458aa)
Metallophosphoesterase Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E2T5_GEOLS
metallophosphoesterase
Tax=BJP_08E140C01_Syntrophobacterales_43_19
PLM4_65_coex_sep16_scaffold_1743_19

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comp(17787..18065)
DNA (279bp) protein (93aa)
Uncharacterized protein Tax=uncultured bacterium RepID=K1YK28_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD37512.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ihfA-3; integration host factor subunit subunit alpha
PLM4_65_coex_sep16_scaffold_1743_20
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18392..18733)
DNA (342bp) protein (114aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G8L0_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ28128.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_1743_21
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18759..19274)
DNA (516bp) protein (172aa)
Uncharacterized protein Tax=Geobacter metallireducens RepID=Q39YN0_GEOMG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB30644.2}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
PLM4_65_coex_sep16_scaffold_1743_22
GWB2_Geobacteraceae_52_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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19402..19977
DNA (576bp) protein (192aa)
Putative uncharacterized protein bin=GWB2_Geobacter-like_52_12 species=Vibrio anguillarum genus=Vibrio taxon_order=Vibrionales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWB2_Geobacter-like_52_12 organism_group=Deltaproteobacteria organism_desc=Good
hypothetical protein
Tax=GWB2_Geobacteraceae_52_12_curated
PLM4_65_coex_sep16_scaffold_1743_23
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(19780..20487)
DNA (708bp) protein (236aa)
Uncharacterized protein Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M160_GEODF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM19130.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32).;"
PLM4_65_coex_sep16_scaffold_1743_24
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(20553..21710)
DNA (1158bp) protein (386aa)
Putative GTP cyclohydrolase 1 type 2 {ECO:0000256|RuleBase:RU004385}; EC=3.5.4.16 {ECO:0000256|RuleBase:RU004385};; GTP cyclohydrolase I {ECO:0000256|RuleBase:RU004385}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
Putative GTP cyclohydrolase 1 type 2 Tax=Geobacter metallireducens RepID=Q39YN2_GEOMG
yqfO; dimetal-binding protein YqfO
PLM4_65_coex_sep16_scaffold_1743_trna_1
unknown

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comp(21792..21865)
DNA (74bp)
transferRNA Met
PLM4_65_coex_sep16_scaffold_1743_25
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(21948..22685)
DNA (738bp) protein (246aa)
Putative RNA methylase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G8M0_GEOUR
putative RNA methylase
Putative RNA methylase {ECO:0000313|EMBL:ABQ28138.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Displaying 26 items

View Taxonomy