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PLM4_65_coex_sep16_scaffold_16290

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Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_16290_1
Amycolatopsis orientalis, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(1..1119)
DNA (1119bp) protein (373aa)
RNA polymerase ECF-subfamily sigma factor Tax=Amycolatopsis orientalis HCCB10007 RepID=R4T4P0_AMYOR
rpoE; RNA polymerase ECF-subfamily sigma factor
RNA polymerase ECF-subfamily sigma factor {ECO:0000313|EMBL:AGM10569.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis orientalis HCCB10007.;"
PLM4_65_coex_sep16_scaffold_16290_2
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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comp(1128..1484)
DNA (357bp) protein (119aa)
hypothetical protein Tax=Amycolatopsis nigrescens RepID=UPI0003664AA1
DGPFAETKE family protein
DGPFAETKE family protein {ECO:0000313|EMBL:ABJ83418.1}; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM4_65_coex_sep16_scaffold_16290_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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1543..1992
DNA (450bp) protein (150aa)
Membrane protein-like protein bin=GWA2_Elusimicrobia_69_24 species=Burkholderia gladioli genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_coex_sep16_scaffold_16290_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(1964..3886)
DNA (1923bp) protein (641aa)
oligopeptide transporter bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Akkermansia muciniphila genus=Akkermansia taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
oligopeptide transporter
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_65_coex_sep16_scaffold_16290_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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4062..4649
DNA (588bp) protein (196aa)
Two component, sigma54 specific, transcriptional regulator, Fis family bin=GWA2_Methylomirabilis_73_35 species=Streptomyces himastatinicus genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Fis family two component sigma-54 specific transcriptional regulator
Tax=GWA2_Rokubacteria_73_35_curated
PLM4_65_coex_sep16_scaffold_16290_6
unknown

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comp(4767..4868)
DNA (102bp) protein (34aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_16290_7
Burkholderia grimmiae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4865..5242)
DNA (378bp) protein (126aa)
Uncharacterized protein Tax=Burkholderia sp. YI23 RepID=G8MNX7_9BURK
Uncharacterized protein {ECO:0000313|EMBL:KDR34421.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia grimmiae.;"
hypothetical protein
Displaying 7 items

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