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PLM4_65_coex_sep16_scaffold_16521

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_16521_1
unknown

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comp(1..429)
DNA (429bp) protein (143aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_16521_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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674..985
DNA (312bp) protein (104aa)
id=14627824 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_coex_sep16_scaffold_16521_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(1186..2505)
DNA (1320bp) protein (440aa)
processing peptidase (EC:3.4.24.64)
Processing peptidase bin=GWC2_Methylomirabilis_70_16 species=Leptolyngbya sp. PCC 6406 genus=Leptolyngbya taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_coex_sep16_scaffold_16521_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(2502..3860)
DNA (1359bp) protein (453aa)
M16 family peptidase (EC:3.4.24.-)
Putative Zn-dependent peptidase bin=GWC2_Methylomirabilis_70_24 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_coex_sep16_scaffold_16521_5
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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comp(3932..4423)
DNA (492bp) protein (164aa)
Sulfoxide reductase heme-binding subunit YedZ bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
yedZ; heme-molybdoenzyme heme-containing subunit YedZ; cytochrome b subunit
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM4_65_coex_sep16_scaffold_16521_6
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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comp(4426..5364)
DNA (939bp) protein (313aa)
Sulfoxide reductase catalytic subunit YedY bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
yedY; exported heme-molybdoenzyme molybdopterin-containing subunit YedY; TAT export
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_65_coex_sep16_scaffold_16521_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(5389..5844)
DNA (456bp) protein (152aa)
DNA-binding response regulator bin=GWA2_Methylomirabilis_73_35 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DNA-binding response regulator
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_coex_sep16_scaffold_16521_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(5841..7505)
DNA (1665bp) protein (555aa)
Integral membrane sensor signal transduction histidine kinase bin=GWA2_Methylomirabilis_73_35 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sensor protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM4_65_coex_sep16_scaffold_16521_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(7513..7677)
DNA (165bp) protein (55aa)
Cytochrome c biogenesis protein, transmembrane region bin=GWA2_Methylomirabilis_73_35 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
alkyl hydroperoxide reductase
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM4_65_coex_sep16_scaffold_16521_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(7799..7993)
DNA (195bp) protein (65aa)
Putative thioredoxin bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Rhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Thiol-disulfide isomerase and thioredoxins
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_coex_sep16_scaffold_16521_11
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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8190..8864
DNA (675bp) protein (225aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_24 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ27504.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Displaying 11 items

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