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PLM4_65_coex_sep16_scaffold_425

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_425_1
Burkholderiales bacterium GJ-E10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3..188
DNA (186bp) protein (62aa)
Putative pterin-4-alpha-carbinolamine dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; Short=PHS {ECO:0000256|HAMAP-Rule:MF_00434};; EC=4.2.1.96 {ECO:0000256|HAMAP-Rule:MF_00434};; 4-alpha-hydroxy-tetrahydropterin dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; Pterin carbinolamine dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium GJ-E10.;"
Pterin 4 alpha carbinolamine dehydratase Tax=mine drainage metagenome RepID=T1B633_9ZZZZ
pterin-4-alpha-carbinolamine dehydratase
PLM4_65_coex_sep16_scaffold_425_2
unknown

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442..666
DNA (225bp) protein (75aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_425_3
unknown

Not on your lists

849..983
DNA (135bp) protein (45aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_425_4
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(997..3546)
DNA (2550bp) protein (850aa)
Putative uncharacterized protein bin=GWE1_T_denit_62_9 species=Rubrivivax benzoatilyticus genus=Rubrivivax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
PLM4_65_coex_sep16_scaffold_425_5
endosymbiont of Riftia pachyptila, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3618..4862)
DNA (1245bp) protein (415aa)
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase {ECO:0000313|EMBL:EGV52769.1}; EC=1.14.13.- {ECO:0000313|EMBL:EGV52769.1};; species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts.;" source="endosymbiont of Riftia pachyptila (vent Ph05).;"
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase Tax=sulfur-oxidizing symbionts RepID=G2D9I5_9GAMM
UbiH/UbiF/VisC/COQ6 family Ubiquinone biosynthesis hydroxylase
PLM4_65_coex_sep16_scaffold_425_6
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4859..6103)
DNA (1245bp) protein (415aa)
2-octaprenyl-6-methoxyphenol hydroxylase,FAD/NAD(P)-binding {ECO:0000313|EMBL:CDI02253.1}; EC=1.14.13.- {ECO:0000313|EMBL:CDI02253.1};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competibacter denitrificans Run_A_D11.;"
ubiquinone biosynthesis protein UbiH Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI000370D3C8
ubiquinone biosynthesis hydroxylase UbiH/UbiF/VisC/COQ6
PLM4_65_coex_sep16_scaffold_425_7
RBG_16_Gammaproteobacteria_57_12_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6100..7407)
DNA (1308bp) protein (436aa)
Peptidase M24 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C2R1_NITHN
peptidase M24
Tax=RBG_16_Gammaproteobacteria_57_12_curated
PLM4_65_coex_sep16_scaffold_425_8
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7424..7990)
DNA (567bp) protein (189aa)
YecA family protein Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GNE8_THISH
YecA family protein
YecA family protein {ECO:0000313|EMBL:ACL73839.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
PLM4_65_coex_sep16_scaffold_425_9
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

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8119..8352
DNA (234bp) protein (78aa)
hypothetical protein Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI00036AB7D4
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
PLM4_65_coex_sep16_scaffold_425_10

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8349..8663
DNA (315bp) protein (105aa)
Cell division protein ZapA-like protein (Fragment) Tax=mine drainage metagenome RepID=T1B7V1_9ZZZZ
Cell division protein ZapA-like protein {ECO:0000313|EMBL:EQD65967.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
PLM4_65_coex_sep16_scaffold_425_11
Marinobacter similis, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8935..9573
DNA (639bp) protein (213aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter similis.;"
hypothetical protein Tax=Kushneria aurantia RepID=UPI00037F9B20
5-formyltetrahydrofolate cyclo-ligase
PLM4_65_coex_sep16_scaffold_425_12
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9570..10028
DNA (459bp) protein (153aa)
EVE domain-containing protein Tax=Methylomonas sp. MK1 RepID=UPI00036772A6
hypothetical protein
Tax=BJP_IG2102_Gammaproteobacteria_62_140
PLM4_65_coex_sep16_scaffold_425_13
endosymbiont of unidentified scaly snail isolate Monju, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10393..11046
DNA (654bp) protein (218aa)
Ribose-5-phosphate isomerase A {ECO:0000256|HAMAP-Rule:MF_00170, ECO:0000256|SAAS:SAAS00020824}; EC=5.3.1.6 {ECO:0000256|HAMAP-Rule:MF_00170, ECO:0000256|SAAS:SAAS00087684};; Phosphoriboisomerase A {ECO:0000256|HAMAP-Rule:MF_00170}; species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="endosymbiont of unidentified scaly snail isolate Monju.;"
ribose 5-phosphate isomerase (EC:5.3.1.6)
Ribose-5-phosphate isomerase A Tax=endosymbiont of unidentified scaly snail isolate Monju RepID=S6C126_9GAMM
PLM4_65_coex_sep16_scaffold_425_14
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11114..11650)
DNA (537bp) protein (179aa)
Uncharacterized protein Tax=Bradyrhizobium sp. STM 3843 RepID=H0TUG4_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:GAO23787.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
hypothetical protein
PLM4_65_coex_sep16_scaffold_425_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11781..12692)
DNA (912bp) protein (304aa)
DNA-binding domain-containing protein, AraC-type Tax=Rhodanobacter denitrificans RepID=I4WYX0_9GAMM
AraC family transcriptional regulator
DNA-binding domain-containing protein, AraC-type {ECO:0000313|EMBL:AGG89791.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
PLM4_65_coex_sep16_scaffold_425_trna_1
unknown

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comp(12809..12879)
DNA (71bp)
transferRNA Gln
PLM4_65_coex_sep16_scaffold_425_16
Pseudomonas sp. HMP271, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12924..13319)
DNA (396bp) protein (132aa)
30S ribosomal protein S9 Tax=Pseudomonas stutzeri (strain A1501) RepID=RS9_PSEU5
rpsI; 30S ribosomal protein S9
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. HMP271.;"
PLM4_65_coex_sep16_scaffold_425_17
Sedimenticola sp. SIP-G1, Sedimenticola, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(13379..13807)
DNA (429bp) protein (143aa)
50S ribosomal protein L13 Tax=endosymbiont of Riftia pachyptila (vent Ph05) RepID=G2DBA7_9GAMM
50S ribosomal protein L13 {ECO:0000313|EMBL:AKH21269.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Sedimenticola.;" source="Sedimenticola sp. SIP-G1.;"
rplM; 50S ribosomal protein L13
PLM4_65_coex_sep16_scaffold_425_18
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13954..14595
DNA (642bp) protein (214aa)
2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase {ECO:0000256|HAMAP-Rule:MF_01658, ECO:0000256|SAAS:SAAS00010155}; EC=1.14.13.- {ECO:0000256|HAMAP-Rule:MF_01658, ECO:0000256|SAAS:SAAS00010150};; 5-demethoxyubiquinone hydroxylase {ECO:0000256|HAMAP-Rule:MF_01658}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum K60-1.;"
2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase Tax=Ralstonia solanacearum K60-1 RepID=H5WEK6_RALSL
putative hydroxylase
PLM4_65_coex_sep16_scaffold_425_19

Not on your lists

14695..15441
DNA (747bp) protein (249aa)
Transcriptional regulator, Crp/Fnr family (Fragment) Tax=mine drainage metagenome RepID=T1CF35_9ZZZZ
Transcriptional regulator, Crp/Fnr family {ECO:0000313|EMBL:EQD80223.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
crp; cAMP-regulatory protein
PLM4_65_coex_sep16_scaffold_425_20
Serratia fonticola, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15590..16282)
DNA (693bp) protein (231aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia fonticola AU-AP2C.;"
ribulose-5-phosphate 3-epimerase (EC:5.1.3.1)
Ribulose-phosphate 3-epimerase Tax=Cycloclasticus sp. PY97M RepID=S2UXH5_9GAMM
PLM4_65_coex_sep16_scaffold_425_21
BJP_IG2158_Methylococcales_50_91, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16293..17084)
DNA (792bp) protein (264aa)
DnaJ-domain-containing protein 1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BP91_9GAMM
djlA; Dna-J like membrane chaperone protein
Tax=BJP_IG2158_Methylococcales_50_91
PLM4_65_coex_sep16_scaffold_425_22
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17217..18113
DNA (897bp) protein (299aa)
phosphoribosylaminoimidazolesuccinocarboxamide synthase (EC:6.3.2.6)
Phosphoribosylaminoimidazole-succinocarboxamide synthase Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=PUR7_THISH
Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
PLM4_65_coex_sep16_scaffold_425_23
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18183..19016)
DNA (834bp) protein (278aa)
Periplasmic binding protein Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y851_LEPCP
periplasmic-binding protein
Periplasmic binding protein {ECO:0000313|EMBL:ACB34921.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
PLM4_65_coex_sep16_scaffold_425_24
Thioalkalivibrio nitratireducens, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19091..20416
DNA (1326bp) protein (442aa)
ribonuclease BN Tax=Thioalkalivibrio RepID=UPI000378C843
rbn_[C]; Ribonuclease BN
Ribonuclease BN {ECO:0000313|EMBL:AGA33846.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 /; ALEN2).;"
PLM4_65_coex_sep16_scaffold_425_25
Cupriavidus taiwanensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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20608..22812
DNA (2205bp) protein (735aa)
Putative signaling diguanylate cyclase (GGDEF) with EAL and PAS domains Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=B3R5T2_CUPTR
signaling diguanylate cyclase (ggdef) with eal and pas domains
Putative signaling diguanylate cyclase (GGDEF) with EAL and PAS domains {ECO:0000313|EMBL:CAQ70246.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus taiwanensis (strain R1 / LMG 19424) (Ralstonia taiwanensis; (strain LMG 19424)).;"
PLM4_65_coex_sep16_scaffold_425_26
Thiobacillus prosperus, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(23047..24396)
DNA (1350bp) protein (450aa)
peptidase C69 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00036365E8
Peptidase PmbA {ECO:0000313|EMBL:KFZ90381.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Thiobacillus prosperus.;"
microcin-processing peptidase 1
PLM4_65_coex_sep16_scaffold_425_27
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24537..25043
DNA (507bp) protein (169aa)
UPF0307 protein Tbd_2147 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Y2147_THIDA
hypothetical protein
UPF0307 protein Tbd_2147 {ECO:0000255|HAMAP-Rule:MF_00765}; species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
PLM4_65_coex_sep16_scaffold_425_28
Meiothermus silvanus, Meiothermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

25257..25757
DNA (501bp) protein (167aa)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Meiothermus.;" source="Meiothermus silvanus (strain ATCC 700542 / DSM 9946 / VI-R2) (Thermus; silvanus).;"
N5-carboxyaminoimidazole ribonucleotide mutase Tax=Meiothermus silvanus (strain ATCC 700542 / DSM 9946 / VI-R2) RepID=D7BEE5_MEISD
phosphoribosylaminoimidazole carboxylase catalytic subunit
PLM4_65_coex_sep16_scaffold_425_29
Desulfurivibrio alkaliphilus, Desulfurivibrio, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25754..26848
DNA (1095bp) protein (365aa)
phosphoribosylaminoimidazole carboxylase, ATPase subunit (EC:4.1.1.21)
N5-carboxyaminoimidazole ribonucleotide synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; Short=N5-CAIR synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; EC=6.3.4.18 {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; 5-(carboxyamino)imidazole ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae; Desulfurivibrio.;" source="Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2).;"
Phosphoribosylaminoimidazole carboxylase, ATPase subunit Tax=Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2) RepID=D6Z3S9_DESAT
Displaying items 1-30 of 34 in total

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