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PLM4_65_coex_sep16_scaffold_7419

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_7419_1
Thauera sp. SWB20, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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1..954
DNA (954bp) protein (318aa)
Peptidase M23 Tax=Thauera RepID=C4KDJ2_THASP
Peptidase M23 family protein {ECO:0000313|EMBL:KIN90875.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. SWB20.;"
peptidase M23
PLM4_65_coex_sep16_scaffold_7419_2
Hydrocarboniphaga effusa, Hydrocarboniphaga, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1078..3000
DNA (1923bp) protein (641aa)
Uncharacterized protein Tax=Hydrocarboniphaga effusa AP103 RepID=I8T896_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIT69948.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboniphaga effusa AP103.;"
hypothetical protein
PLM4_65_coex_sep16_scaffold_7419_3
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3146..3733)
DNA (588bp) protein (196aa)
hypothetical protein Tax=Rudaea cellulosilytica RepID=UPI0003785F31
Cysteine dioxygenase {ECO:0000313|EMBL:KJV32037.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
putative metal-dependent enzyme of the double-stranded beta helix superfamily
PLM4_65_coex_sep16_scaffold_7419_4
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3717..5084)
DNA (1368bp) protein (456aa)
hypothetical protein Tax=Methylovulum miyakonense RepID=UPI000367143C
peptidase C13, legumain asparaginyl peptidase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
PLM4_65_coex_sep16_scaffold_7419_5
Halomonas anticariensis, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5111..6178)
DNA (1068bp) protein (356aa)
Homoserine O-acetyltransferase {ECO:0000256|HAMAP-Rule:MF_00296, ECO:0000256|SAAS:SAAS00070949}; EC=2.3.1.31 {ECO:0000256|HAMAP-Rule:MF_00296, ECO:0000256|SAAS:SAAS00070942};; Homoserine O-trans-acetylase {ECO:0000256|HAMAP-Rule:MF_00296}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas anticariensis FP35 = DSM 16096.;"
metX; homoserine O-acetyltransferase (EC:2.3.1.31)
Homoserine O-acetyltransferase Tax=Halomonas anticariensis FP35 = DSM 16096 RepID=S2KHP1_9GAMM
PLM4_65_coex_sep16_scaffold_7419_6
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6487..7419)
DNA (933bp) protein (311aa)
Putative esterase Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9AZV2_HERA2
hypothetical protein
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
PLM4_65_coex_sep16_scaffold_7419_7
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7663..9042)
DNA (1380bp) protein (460aa)
GTPase Der Tax=endosymbiont of unidentified scaly snail isolate Monju RepID=S6BXK7_9GAMM
GTP-binding protein EngA
Tax=BJP_IG2102_Gammaproteobacteria_62_140
PLM4_65_coex_sep16_scaffold_7419_8
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9061..10038)
DNA (978bp) protein (326aa)
Uncharacterized protein Tax=endosymbiont of unidentified scaly snail isolate Monju RepID=S6BIB6_9GAMM
Outer membrane protein assembly factor BamB {ECO:0000256|HAMAP-Rule:MF_00923}; Flags: Precursor;; species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
outer membrane YfgL-like protein
PLM4_65_coex_sep16_scaffold_7419_9
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10225..10923)
DNA (699bp) protein (233aa)
hypothetical protein Tax=Singularimonas variicoloris RepID=UPI00036F87E0
TPR repeat family protein
Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
PLM4_65_coex_sep16_scaffold_7419_10
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10957..12231)
DNA (1275bp) protein (425aa)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00127}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
Histidine--tRNA ligase Tax=Thiothrix nivea DSM 5205 RepID=I3BQ22_9GAMM
histidyl-tRNA synthase
PLM4_65_coex_sep16_scaffold_7419_11

Not on your lists

comp(12253..12996)
DNA (744bp) protein (248aa)
hypothetical protein Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002F361E5
Uncharacterized protein {ECO:0000313|EMBL:EQD47177.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
PLM4_65_coex_sep16_scaffold_7419_12
Halorhodospira halochloris, Halorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13015..13764)
DNA (750bp) protein (250aa)
Uncharacterized protein Tax=Hydrocarboniphaga effusa AP103 RepID=I8T8P1_9GAMM
pilus assembly protein PilW
Pilus assembly protein PilW {ECO:0000313|EMBL:AHK79554.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Halorhodospira.;" source="Halorhodospira halochloris str. A.;"
PLM4_65_coex_sep16_scaffold_7419_13
Hydrocarboniphaga effusa, Hydrocarboniphaga, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13761..15005)
DNA (1245bp) protein (415aa)
Dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboniphaga effusa AP103.;"
Dual-specificity RNA methyltransferase RlmN Tax=Hydrocarboniphaga effusa AP103 RepID=I8I2Y1_9GAMM
hypothetical protein
PLM4_65_coex_sep16_scaffold_7419_14
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15039..15470)
DNA (432bp) protein (144aa)
ndk; nucleoside diphosphate kinase (EC:2.7.4.6)
Nucleoside diphosphate kinase Tax=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) RepID=NDK_METCA
Tax=RBG_16_Gamma2_65_34_curated
PLM4_65_coex_sep16_scaffold_7419_15

Not on your lists

comp(15664..15987)
DNA (324bp) protein (108aa)
ISC system FeS cluster assembly protein Tax=mine drainage metagenome RepID=T1AH14_9ZZZZ
ISC system FeS cluster assembly protein {ECO:0000313|EMBL:EQD59796.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
iscA; iron-sulfur cluster assembly protein
PLM4_65_coex_sep16_scaffold_7419_16
Nitrococcus mobilis, Nitrococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(16015..16431)
DNA (417bp) protein (139aa)
Uncharacterized protein Tax=Nitrococcus mobilis Nb-231 RepID=A4BSU8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EAR21192.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Nitrococcus.;" source="Nitrococcus mobilis Nb-231.;"
Fe-S cluster assembly protein NifU
PLM4_65_coex_sep16_scaffold_7419_17
marine gamma proteobacterium HTCC2080, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16495..17703)
DNA (1209bp) protein (403aa)
Cysteine desulfurase IscS {ECO:0000256|HAMAP-Rule:MF_00331, ECO:0000256|SAAS:SAAS00038344}; EC=2.8.1.7 {ECO:0000256|HAMAP-Rule:MF_00331, ECO:0000256|SAAS:SAAS00063383};; species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade.;" source="marine gamma proteobacterium HTCC2080.;"
Cysteine desulfurase Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z851_9GAMM
iscS; cysteine desulfurase
PLM4_65_coex_sep16_scaffold_7419_18

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comp(17700..18137)
DNA (438bp) protein (146aa)
RNA methyltransferase, TrmH family, group 1 (Fragment) Tax=mine drainage metagenome RepID=T1AX34_9ZZZZ
RNA methyltransferase, TrmH family, group 1 {ECO:0000313|EMBL:EQD60953.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
TrmH family RNA methyltransferase, group 1
Displaying 18 items

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