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PLM4_65_coex_sep16_scaffold_7710

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_7710_1

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1..108
DNA (108bp) protein (36aa)
Ribosomal protein L21 Tax=mine drainage metagenome RepID=T1CSP9_9ZZZZ
Ribosomal protein L21 {ECO:0000313|EMBL:EQD72375.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ribosomal protein L21
PLM4_65_coex_sep16_scaffold_7710_2

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147..404
DNA (258bp) protein (86aa)
Ribosomal protein L27 Tax=mine drainage metagenome RepID=T1BHB1_9ZZZZ
Ribosomal protein L27 {ECO:0000313|EMBL:EQD72376.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
rpmA; 50S ribosomal protein L27
PLM4_65_coex_sep16_scaffold_7710_3
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(385..1281)
DNA (897bp) protein (299aa)
Putative lipoprotein Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0C4I6_HYPNA
Uncharacterized protein {ECO:0000313|EMBL:GAO38829.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
putative lipoprotein
PLM4_65_coex_sep16_scaffold_7710_4
unknown

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1883..2218
DNA (336bp) protein (112aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_7710_5
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2317..2763)
DNA (447bp) protein (149aa)
AsnC family transcriptional regulator Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CAC2A
Transcriptional regulator {ECO:0000313|EMBL:KKC24694.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
AsnC family transcriptional regulator
PLM4_65_coex_sep16_scaffold_7710_6
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2893..3990
DNA (1098bp) protein (366aa)
Alanine dehydrogenase {ECO:0000256|PIRNR:PIRNR000183}; EC=1.4.1.1 {ECO:0000256|PIRNR:PIRNR000183};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
alanine dehydrogenase Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00036D5083
alanine dehydrogenase
PLM4_65_coex_sep16_scaffold_7710_7
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

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4119..4862
DNA (744bp) protein (248aa)
Uncharacterized protein Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RKR5_BLASD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCG03681.1}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strain DD2).;"
PLM4_65_coex_sep16_scaffold_7710_8
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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4916..7222
DNA (2307bp) protein (769aa)
GTPase Obg Tax=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) RepID=OBG_METCA
obgE; GTPase ObgE
Tax=RBG_16_Gamma2_60_9_curated
PLM4_65_coex_sep16_scaffold_7710_9
Thiobacillus prosperus, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7302..7580)
DNA (279bp) protein (93aa)
30S ribosomal protein S20 Tax=Dasania marina RepID=UPI0003821CA9
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Thiobacillus prosperus.;"
30S ribosomal protein S20
PLM4_65_coex_sep16_scaffold_7710_10
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

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7782..9338
DNA (1557bp) protein (519aa)
Virulence factor mviN Tax=Marinobacter nanhaiticus D15-8W RepID=N6WNM5_9ALTE
integral membrane protein MviN
Tax=BJP_IG2102_Gammaproteobacteria_62_140
PLM4_65_coex_sep16_scaffold_7710_11
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

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9374..10330
DNA (957bp) protein (319aa)
Uncharacterized protein Tax=Nitrococcus mobilis Nb-231 RepID=A4BTU4_9GAMM
riboflavin biosynthesis protein RibF
Tax=BJP_IG2102_Gammaproteobacteria_62_140
PLM4_65_coex_sep16_scaffold_7710_12
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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10349..13123
DNA (2775bp) protein (925aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02002}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
Isoleucine--tRNA ligase Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BY94_NITHN
isoleucyl-tRNA synthetase
PLM4_65_coex_sep16_scaffold_7710_13
Alcanivorax hongdengensis, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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13075..13698
DNA (624bp) protein (208aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax hongdengensis A-11-3.;"
Lipoprotein signal peptidase Tax=Alcanivorax hongdengensis A-11-3 RepID=L0WC19_9GAMM
signal peptidase
PLM4_65_coex_sep16_scaffold_7710_14
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

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13736..14722
DNA (987bp) protein (329aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competibacter denitrificans Run_A_D11.;"
4-hydroxy-3-methylbut-2-enyl diphosphate reductase Tax=Marinobacter hydrocarbonoclasticus ATCC 49840 RepID=H8W5J8_MARHY
ispH; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase
PLM4_65_coex_sep16_scaffold_7710_15
Pseudomonas tuomuerensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(14706..15164)
DNA (459bp) protein (153aa)
Type 4 fimbrial biogenesis protein PilE Tax=Pseudomonas sp. (strain M1) RepID=L1HS84_PSEUO
Pilus assembly protein PilE {ECO:0000313|EMBL:KHO64579.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas tuomuerensis.;"
type IV pilus biogenesis protein PilE
PLM4_65_coex_sep16_scaffold_7710_16
Alteromonas australica, Alteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(15161..16381)
DNA (1221bp) protein (407aa)
Type IV pilus assembly protein PilY1 Tax=Glaciecola arctica BSs20135 RepID=K6YP99_9ALTE
pilus assembly protein PilY
Pilus assembly protein PilY {ECO:0000313|EMBL:AIF99480.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Alteromonas.;" source="Alteromonas australica.;"
Displaying 16 items

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