ggKbase home page

PLM4_65_coex_sep16_scaffold_2499

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_2499_1
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..234
DNA (234bp) protein (78aa)
Regulatory protein {ECO:0000313|EMBL:AKC87880.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
transcriptional regulator transcription regulator protein bin=GWF1_Xanthomonadales_69_6 species=Xanthomonas sacchari genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
FMN-binding negative transcriptional regulator
PLM4_65_coex_sep16_scaffold_2499_2
Desulfobacca acetoxidans, Desulfobacca, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

519..1919
DNA (1401bp) protein (467aa)
anthranilate synthase component I (EC:4.1.3.27)
Anthranilate synthase component I {ECO:0000313|EMBL:AEB09672.1}; EC=4.1.3.27 {ECO:0000313|EMBL:AEB09672.1};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Desulfobacca.;" source="Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2).;"
Anthranilate synthase component I Tax=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) RepID=F2NI46_DESAR
PLM4_65_coex_sep16_scaffold_2499_3
Ammonifex degensii, Ammonifex, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

1916..2536
DNA (621bp) protein (207aa)
Glutamine amidotransferase of anthranilate synthase Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9RDF1_AMMDK
glutamine amidotransferase of anthranilate synthase
Glutamine amidotransferase of anthranilate synthase {ECO:0000313|EMBL:ACX52278.1}; species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Ammonifex.;" source="Ammonifex degensii (strain DSM 10501 / KC4).;"
PLM4_65_coex_sep16_scaffold_2499_4
Ammonifex degensii, Ammonifex, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

2508..3539
DNA (1032bp) protein (344aa)
Anthranilate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083107}; EC=2.4.2.18 {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083113};; species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Ammonifex.;" source="Ammonifex degensii (strain DSM 10501 / KC4).;"
Anthranilate phosphoribosyltransferase Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9RDF0_AMMDK
anthranilate phosphoribosyltransferase
PLM4_65_coex_sep16_scaffold_2499_5
Streptomyces coelicoflavus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3536..4360
DNA (825bp) protein (275aa)
Indole-3-glycerol phosphate synthase Tax=Streptomyces coelicoflavus ZG0656 RepID=H1Q5T0_9ACTO
Indole-3-glycerol-phosphate synthase {ECO:0000313|EMBL:EHN80155.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces coelicoflavus ZG0656.;"
trpC; indole-3-glycerol phosphate synthase
PLM4_65_coex_sep16_scaffold_2499_6
Desulfotomaculum kuznetsovii, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4491..5090
DNA (600bp) protein (200aa)
phosphoribosylanthranilate isomerase (EC:5.3.1.24)
N-(5'-phosphoribosyl)anthranilate isomerase {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123216}; Short=PRAI {ECO:0000256|HAMAP-Rule:MF_00135};; EC=5.3.1.24 {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123176};; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17).;"
N-(5'-phosphoribosyl)anthranilate isomerase Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CML9_DESK7
PLM4_65_coex_sep16_scaffold_2499_7
Thermobaculum terrenum, Thermobaculum, Bacteria

Not on your lists

5114..6367
DNA (1254bp) protein (418aa)
Tryptophan synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00133}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00133};; species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).;"
Tryptophan synthase beta chain Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CBJ2_THET1
tryptophan synthase subunit beta
PLM4_65_coex_sep16_scaffold_2499_8
Desulfovibrio vulgaris, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6364..7140
DNA (777bp) protein (259aa)
trpA; tryptophan synthase subunit alpha (EC:4.2.1.20)
Tryptophan synthase alpha chain {ECO:0000255|HAMAP-Rule:MF_00131}; EC=4.2.1.20 {ECO:0000255|HAMAP-Rule:MF_00131};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB; 8303).;"
Tryptophan synthase alpha chain Tax=Desulfovibrio vulgaris RepID=TRPA_DESVH
PLM4_65_coex_sep16_scaffold_2499_9
Prevotella sp. S7-1-8, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

7176..7520
DNA (345bp) protein (115aa)
UPF0145 protein PBR_1530 Tax=Prevotella bryantii B14 RepID=D8DTU5_PREBR
UPF0145 protein HMPREF1640_07610 {ECO:0000256|HAMAP-Rule:MF_00338}; species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella sp. S7-1-8.;"
hypothetical protein
PLM4_65_coex_sep16_scaffold_2499_10
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7647..7967
DNA (321bp) protein (107aa)
XRE family transcriptional regulator Tax=Cupriavidus sp. WS RepID=UPI00035FB84E
hypothetical protein
XRE family transcriptional regulator {ECO:0000313|EMBL:KDP88972.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
PLM4_65_coex_sep16_scaffold_2499_11
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7927..8625
DNA (699bp) protein (233aa)
Uncharacterized protein Tax=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) RepID=Q0KBT0_CUPNH
h16_A1406; hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ92541.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337); (Ralstonia eutropha).;"
PLM4_65_coex_sep16_scaffold_2499_12
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(8619..10121)
DNA (1503bp) protein (501aa)
Amidohydrolase Tax=Pectobacterium carotovorum subsp. carotovorum (strain PC1) RepID=C6DKL6_PECCP
amidohydrolase
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_65_coex_sep16_scaffold_2499_13

Not on your lists

10249..10962
DNA (714bp) protein (238aa)
hypothetical protein Tax=Flexithrix dorotheae RepID=UPI00037EBF33
Uncharacterized protein {ECO:0000313|EMBL:KKL75451.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
PLM4_65_coex_sep16_scaffold_2499_14

Not on your lists

comp(11119..11337)
DNA (219bp) protein (73aa)
hypothetical protein Tax=Flexithrix dorotheae RepID=UPI00037EBF33
Uncharacterized protein {ECO:0000313|EMBL:KKO03047.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
Displaying 14 items

View Taxonomy