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PLM4_65_coex_sep16_scaffold_2770

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_2770_1
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..386)
DNA (384bp) protein (128aa)
(2Fe-2S)-binding protein Tax=Spirosoma panaciterrae RepID=UPI000376DEFE
(2Fe-2S)-binding protein
Tax=RBG_16_Gamma2_65_34_curated
PLM4_65_coex_sep16_scaffold_2770_2
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

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487..1200
DNA (714bp) protein (238aa)
Rieske (2Fe-2S) domain protein Tax=Roseiflexus sp. (strain RS-1) RepID=A5URY5_ROSS1
Rieske (2Fe-2S) domain-containing protein
Rieske (2Fe-2S) domain protein {ECO:0000313|EMBL:ABQ89388.1}; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus sp. (strain RS-1).;"
PLM4_65_coex_sep16_scaffold_2770_3

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1343..1870
DNA (528bp) protein (176aa)
Uncharacterized protein Tax=uncultured bacterium RepID=K1ZQI0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD51952.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
signal peptide
PLM4_65_coex_sep16_scaffold_2770_4

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1937..2980
DNA (1044bp) protein (348aa)
Thioredoxin-disulfide reductase Tax=mine drainage metagenome RepID=T0YVP8_9ZZZZ
Thioredoxin-disulfide reductase {ECO:0000313|EMBL:EQD37098.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ferredoxin--NADP reductase
PLM4_65_coex_sep16_scaffold_2770_5
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3067..3528
DNA (462bp) protein (154aa)
azurin Tax=Stenotrophomonas maltophilia RepID=UPI00037B00BE
azurin
Azurin {ECO:0000313|EMBL:AJC47734.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
PLM4_65_coex_sep16_scaffold_2770_6
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(3519..4559)
DNA (1041bp) protein (347aa)
Aspartate kinase homoserine dehydrogenase {ECO:0000313|EMBL:CDM64086.1}; EC=1.1.1.3 {ECO:0000313|EMBL:CDM64086.1};; EC=2.7.2.4 {ECO:0000313|EMBL:CDM64086.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
homoserine dehydrogenase (EC:1.1.1.3)
homoserine dehydrogenase Tax=Maricaulis sp. JL2009 RepID=UPI0003AA00D5
PLM4_65_coex_sep16_scaffold_2770_7
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5013..5897
DNA (885bp) protein (295aa)
Acyl-CoA thioesterase II {ECO:0000313|EMBL:ABS64457.1}; EC=3.1.2.2 {ECO:0000313|EMBL:ABS64457.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Acyl-CoA thioesterase II Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HX24_PARL1
acyl-CoA thioesterase II
PLM4_65_coex_sep16_scaffold_2770_8
unknown

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5908..6069
DNA (162bp) protein (54aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_2770_9
Cystobacter fuscus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(6134..6757)
DNA (624bp) protein (208aa)
GCN5 family acetyltransferase Tax=Paenibacillus sp. JC66 RepID=UPI000287DEC0
N-acetyltransferase GCN5
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:EPX61819.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter fuscus DSM 2262.;"
PLM4_65_coex_sep16_scaffold_2770_10
unknown

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comp(6782..6958)
DNA (177bp) protein (59aa)
Amino acid permease bin=CD_OP8_4m species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
PLM4_65_coex_sep16_scaffold_2770_11

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comp(7049..7978)
DNA (930bp) protein (310aa)
Marine sediment metagenome DNA, contig: S01H1_L07134 {ECO:0000313|EMBL:GAF68323.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Putative Carboxylesterase bin=GWF2_Melioribacter_38_21 species=Marinobacter hydrocarbonoclasticus genus=Marinobacter taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Melioribacter_38_21 organism_group=Ignavibacteria
alpha/beta hydrolase fold protein
PLM4_65_coex_sep16_scaffold_2770_12
unknown

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comp(8024..8512)
DNA (489bp) protein (163aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_2770_13
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8541..9962)
DNA (1422bp) protein (474aa)
FAD linked oxidase domain protein Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2S485_GEOOG
2-hydroxyacid dehydrogenase {ECO:0000313|EMBL:KGM32270.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
FAD linked oxidase domain-containing protein
PLM4_65_coex_sep16_scaffold_2770_14
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10045..10341
DNA (297bp) protein (99aa)
hypothetical protein Tax=Bradyrhizobium elkanii RepID=UPI00035C70D1
NHL repeat containing protein
NHL repeat containing protein {ECO:0000313|EMBL:ACL62988.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
PLM4_65_coex_sep16_scaffold_2770_15
unknown

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10872..11699
DNA (828bp) protein (276aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_2770_16
Thioalkalivibrio thiocyanoxidans, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11936..12499)
DNA (564bp) protein (188aa)
Acetyl-CoA synthetase (ADP-forming) alpha and beta chains, putative Tax=Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 / ALEN2) RepID=L0DZX6_THIND
yfiQ_[H]; Acetyl-CoA synthetase (ADP-forming) alpha and beta chains, putative
Acetyl-CoA synthetase {ECO:0000313|EMBL:AHE97727.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio thiocyanoxidans ARh 4.;"
PLM4_65_coex_sep16_scaffold_2770_17
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12528..13298)
DNA (771bp) protein (257aa)
Membrane protein containing DUF125, transmembrane Tax=mine drainage metagenome RepID=T1A2Q4_9ZZZZ
hypothetical protein
Tax=BJP_IG2102_Gammaproteobacteria_62_140
PLM4_65_coex_sep16_scaffold_2770_18

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comp(13553..13891)
DNA (339bp) protein (113aa)
Uncharacterized protein Tax=mine drainage metagenome RepID=T1A5F5_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EQD36099.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
PLM4_65_coex_sep16_scaffold_2770_19
Methyloversatilis universalis, Methyloversatilis, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13969..15222
DNA (1254bp) protein (418aa)
Putative uncharacterized protein Tax=Methyloversatilis universalis FAM5 RepID=F5RDD5_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:EGK70916.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Methyloversatilis.;" source="Methyloversatilis universalis (strain ATCC BAA-1314 / JCM 13912 /; FAM5).;"
putative transmembrane protein
PLM4_65_coex_sep16_scaffold_2770_20
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15443..16594
DNA (1152bp) protein (384aa)
Glutamate 5-kinase {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00057535}; EC=2.7.2.11 {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00186442};; Gamma-glutamyl kinase {ECO:0000256|HAMAP-Rule:MF_00456}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
Glutamate 5-kinase Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TPW8_TISMK
proB; gamma-glutamyl kinase
PLM4_65_coex_sep16_scaffold_2770_21
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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16591..17892
DNA (1302bp) protein (434aa)
Gamma-glutamyl phosphate reductase {ECO:0000255|HAMAP-Rule:MF_00412}; Short=GPR {ECO:0000255|HAMAP-Rule:MF_00412};; EC=1.2.1.41 {ECO:0000255|HAMAP-Rule:MF_00412};; Glutamate-5-semialdehyde dehydrogenase {ECO:0000255|HAMAP-Rule:MF_00412}; Glutamyl-gamma-semialdehyde dehydrogenase {ECO:0000255|HAMAP-Rule:MF_00412}; Short=GSA dehydrogenase {ECO:0000255|HAMAP-Rule:MF_00412};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Gamma-glutamyl phosphate reductase Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=PROA_PARL1
gamma-glutamyl phosphate reductase
PLM4_65_coex_sep16_scaffold_2770_22
unknown

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18118..18288
DNA (171bp) protein (57aa)

This feature has no annotations

Displaying 22 items

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