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PLM4_65_coex_sep16_scaffold_5384

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_5384_1
Solemya velum gill symbiont, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1..198)
DNA (198bp) protein (66aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts.;" source="Solemya velum gill symbiont.;"
phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20)
phenylalanyl-tRNA synthetase Tax=Thioalkalivibrio sp. ALSr1 RepID=UPI0003798E95
PLM4_65_coex_sep16_scaffold_5384_2

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comp(219..584)
DNA (366bp) protein (122aa)
Ribosomal protein L20, bacterial-type Tax=mine drainage metagenome RepID=T0YU38_9ZZZZ
Ribosomal protein L20, bacterial-type {ECO:0000313|EMBL:EQD35407.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
50S ribosomal protein L20
PLM4_65_coex_sep16_scaffold_5384_3
Cardiobacterium hominis, Cardiobacterium, Cardiobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(619..813)
DNA (195bp) protein (65aa)
50S ribosomal protein L35 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N8I7_9GAMM
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Cardiobacteriales; Cardiobacteriaceae; Cardiobacterium.;" source="Cardiobacterium hominis ATCC 15826.;"
LSU ribosomal protein L35p
PLM4_65_coex_sep16_scaffold_5384_4

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comp(971..1375)
DNA (405bp) protein (135aa)
Translation initiation factor IF-3 Tax=mine drainage metagenome RepID=T0ZNS3_9ZZZZ
Translation initiation factor IF-3 {ECO:0000313|EMBL:EQD46107.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
translation initiation factor IF-3
PLM4_65_coex_sep16_scaffold_5384_5
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1493..3421)
DNA (1929bp) protein (643aa)
threonyl-tRNA synthetase Tax=Thiothrix flexilis RepID=UPI00037107C6
threonyl-tRNA synthetase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM4_65_coex_sep16_scaffold_5384_trna_1
unknown

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comp(3504..3575)
DNA (72bp)
transferRNA Val
PLM4_65_coex_sep16_scaffold_5384_6
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3664..5712)
DNA (2049bp) protein (683aa)
excinuclease ABC subunit B Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI0003791B8A
excinuclease ABC subunit B
Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
PLM4_65_coex_sep16_scaffold_5384_7
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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5811..7064
DNA (1254bp) protein (418aa)
Aminotransferase class I and II Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C014_NITHN
class I and II aminotransferase
Aminotransferase class I and II {ECO:0000313|EMBL:ADE16261.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
PLM4_65_coex_sep16_scaffold_5384_8
unknown

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comp(7079..7348)
DNA (270bp) protein (90aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_5384_9
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

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comp(7416..9593)
DNA (2178bp) protein (726aa)
TonB-dependent receptor Tax=Turneriella parva (strain ATCC BAA-1111 / DSM 21527 / NCTC 11395 / H) RepID=I4B7J6_TURPD
TonB-dependent receptor
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM4_65_coex_sep16_scaffold_5384_10
Allochromatium vinosum, Allochromatium, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9707..10609)
DNA (903bp) protein (301aa)
UTP--glucose-1-phosphate uridylyltransferase {ECO:0000256|RuleBase:RU361259}; EC=2.7.7.9 {ECO:0000256|RuleBase:RU361259};; UDP-glucose pyrophosphorylase {ECO:0000256|RuleBase:RU361259}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Allochromatium.;" source="Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 /; NCIMB 10441 / D) (Chromatium vinosum).;"
UTP-glucose-1-phosphate uridylyltransferase Tax=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) RepID=D3RMR7_ALLVD
UTP-glucose-1-phosphate uridylyltransferase
PLM4_65_coex_sep16_scaffold_5384_11
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10733..11053)
DNA (321bp) protein (107aa)
Competence protein ComEA helix-hairpin-helix repeat protein Tax=Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM B-2133 / 20Z) RepID=G4SXM8_META2
ComEA-related DNA uptake protein {ECO:0000313|EMBL:KGQ17740.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
Competence protein ComEA helix-hairpin-helix repeat protein (fragment)
PLM4_65_coex_sep16_scaffold_5384_12
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11160..12341)
DNA (1182bp) protein (394aa)
Tetratricopeptide TPR_2 repeat protein Tax=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) RepID=Q0AA49_ALKEH
hypothetical protein
Tax=BJP_IG2102_Gammaproteobacteria_62_140
PLM4_65_coex_sep16_scaffold_5384_13
endosymbiont of unidentified scaly snail isolate Monju, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12331..12621)
DNA (291bp) protein (97aa)
Uncharacterized protein Tax=endosymbiont of unidentified scaly snail isolate Monju RepID=S6CFV4_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN69005.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="endosymbiont of unidentified scaly snail isolate Monju.;"
PLM4_65_coex_sep16_scaffold_5384_14
Halorhodospira halochloris, Halorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13141..14814)
DNA (1674bp) protein (558aa)
30S ribosomal protein S1 Tax=Ectothiorhodospira sp. PHS-1 RepID=H1G4D4_9GAMM
rpsA; 30S ribosomal protein S1
30S ribosomal protein S1 {ECO:0000313|EMBL:AHK79162.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Halorhodospira.;" source="Halorhodospira halochloris str. A.;"
PLM4_65_coex_sep16_scaffold_5384_15
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(14931..15626)
DNA (696bp) protein (232aa)
Cytidylate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; Short=CK {ECO:0000256|HAMAP-Rule:MF_00238};; EC=2.7.4.25 {ECO:0000256|HAMAP-Rule:MF_00238};; Cytidine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
cytidylate kinase (EC:2.7.4.14)
cytidylate kinase Tax=Arenimonas oryziterrae RepID=UPI0003B5462E
PLM4_65_coex_sep16_scaffold_5384_16
Alcanivorax jadensis, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15623..16945)
DNA (1323bp) protein (441aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|RuleBase:RU000531, ECO:0000256|SAAS:SAAS00240549}; EC=2.5.1.19 {ECO:0000256|RuleBase:RU000531, ECO:0000256|SAAS:SAAS00240533};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax jadensis T9.;"
Cyclohexadienyl dehydrogenase Tax=Alcanivorax sp. P2S70 RepID=U7FU16_9GAMM
aroA; 3-phosphoshikimate 1-carboxyvinyltransferase
PLM4_65_coex_sep16_scaffold_5384_17
Thioflavicoccus mobilis, Thioflavicoccus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(16942..18075)
DNA (1134bp) protein (378aa)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; Flags: Precursor;; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thioflavicoccus.;" source="Thioflavicoccus mobilis 8321.;"
histidinol-phosphate aminotransferase Tax=Thioalkalivibrio sp. ALE28 RepID=UPI00037777E7
histidinol-phosphate aminotransferase
PLM4_65_coex_sep16_scaffold_5384_18
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18072..19136)
DNA (1065bp) protein (355aa)
prephenate dehydratase Tax=Arenimonas oryziterrae RepID=UPI0003B41D86
chorismate mutase
Tax=BJP_IG2102_Gammaproteobacteria_62_140
PLM4_65_coex_sep16_scaffold_5384_19
Nitrococcus mobilis, Nitrococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(19212..19823)
DNA (612bp) protein (204aa)
3-phosphoglycerate dehydrogenase Tax=Singularimonas variicoloris RepID=UPI000374897A
D-isomer specific 2-hydroxyacid dehydrogenase {ECO:0000313|EMBL:EAR23387.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Nitrococcus.;" source="Nitrococcus mobilis Nb-231.;"
NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase protein
PLM4_65_coex_sep16_scaffold_5384_20
Halorhodospira halophila, Halorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19810..20388)
DNA (579bp) protein (193aa)
D-3-phosphoglycerate dehydrogenase {ECO:0000313|EMBL:ABM61355.1}; EC=1.1.1.95 {ECO:0000313|EMBL:ABM61355.1};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Halorhodospira.;" source="Halorhodospira halophila (strain DSM 244 / SL1) (Ectothiorhodospira; halophila (strain DSM 244 / SL1)).;"
D-3-phosphoglycerate dehydrogenase Tax=Halorhodospira halophila (strain DSM 244 / SL1) RepID=A1WUJ3_HALHL
D-isomer specific 2-hydroxyacid dehydrogenase
PLM4_65_coex_sep16_scaffold_5384_21
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20398..21477)
DNA (1080bp) protein (360aa)
phosphoserine aminotransferase (EC:2.6.1.52)
Phosphoserine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160, ECO:0000256|RuleBase:RU004505}; EC=2.6.1.52 {ECO:0000256|HAMAP-Rule:MF_00160, ECO:0000256|RuleBase:RU004505};; Phosphohydroxythreonine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
MFS transporter Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI0003683D4F
PLM4_65_coex_sep16_scaffold_5384_22
Thiobacillus prosperus, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(21523..24111)
DNA (2589bp) protein (863aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Thiobacillus prosperus.;"
DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI000365B6E4
PLM4_65_coex_sep16_scaffold_5384_23
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24261..24977
DNA (717bp) protein (239aa)
3-demethylubiquinone-9 3-methyltransferase (EC:2.1.1.64)
3-demethylubiquinone-9 3-methyltransferase Tax=Microbulbifer agarilyticus RepID=UPI000255B83A
Tax=BJP_IG2102_Gammaproteobacteria_62_140
PLM4_65_coex_sep16_scaffold_5384_24
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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24981..25652
DNA (672bp) protein (224aa)
Phosphoglycolate phosphatase {ECO:0000256|SAAS:SAAS00077902}; EC=3.1.3.18 {ECO:0000256|SAAS:SAAS00077902};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
phosphoglycolate phosphatase Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI0003613A7C
2-phosphoglycolate phosphatase
PLM4_65_coex_sep16_scaffold_5384_25
Methylophaga nitratireducenticrescens, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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25631..27046
DNA (1416bp) protein (472aa)
DNA recombination protein RmuC Tax=Methylophaga nitratireducenticrescens (strain ATCC BAA-2433 / DSM 25689 / JAM1) RepID=I1XHC5_METNJ
DNA recombination protein RmuC
Methylophaga nitratireducenticrescens strain JAM1, complete genome {ECO:0000313|EMBL:AFI83794.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Methylophaga.;" source="Methylophaga nitratireducenticrescens (strain ATCC BAA-2433 / DSM; 25689 / JAM1).;"
PLM4_65_coex_sep16_scaffold_5384_26
unknown

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27053..27136
DNA (84bp) protein (28aa)

This feature has no annotations

Displaying 27 items

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