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PLM4_65_coex_sep16_scaffold_5830

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_5830_1
RBG_16_Chloroflexi_51_16_curated, Chloroflexi, Bacteria

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comp(1..180)
DNA (180bp) protein (60aa)
Protein containing DUF606 bin=GWB2_Chloroflexi_54_36 species=unknown genus=Pseudovibrio taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWB2_Chloroflexi_54_36 organism_group=Chloroflexi organism_desc=a81
hypothetical protein
Tax=RBG_16_Chloroflexi_51_16_curated
PLM4_65_coex_sep16_scaffold_5830_2
Pseudomonas alcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(195..1169)
DNA (975bp) protein (325aa)
Phosphopentomutase {ECO:0000256|HAMAP-Rule:MF_00740, ECO:0000256|SAAS:SAAS00010015}; EC=5.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00740, ECO:0000256|SAAS:SAAS00009998};; Phosphodeoxyribomutase {ECO:0000256|HAMAP-Rule:MF_00740}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas alcaligenes OT 69.;"
phosphopentomutase (EC:5.4.2.7)
Phosphopentomutase Tax=Pseudomonas alcaligenes OT 69 RepID=U3HED0_PSEAC
PLM4_65_coex_sep16_scaffold_5830_3
Grimontia sp. AD028, Grimontia, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1243..2478)
DNA (1236bp) protein (412aa)
nucleoside transporter NupC Tax=Enterovibrio calviensis RepID=UPI0002E41BF7
Nucleoside permease {ECO:0000256|RuleBase:RU362018}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Grimontia.;" source="Grimontia sp. AD028.;"
nucleoside transporter
PLM4_65_coex_sep16_scaffold_5830_4
CG_Delta_07, Deltaproteobacteria, Proteobacteria, Bacteria

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2745..5762
DNA (3018bp) protein (1006aa)
Uncharacterized protein Tax=Phytophthora parasitica P1569 RepID=V9ELR7_PHYPR
PDZ/DHR/GLGF domain-containing protein
Tax=CG_Delta_07
PLM4_65_coex_sep16_scaffold_5830_5
Lysobacter defluvii, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5965..6351
DNA (387bp) protein (129aa)
Uncharacterized protein {ECO:0000313|EMBL:KGO97935.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter defluvii IMMIB APB-9 = DSM 18482.;"
Putative uncharacterized protein bin=GWF1_Xanthomonadales_69_6 species=Thiomicrospira crunogena genus=Thiomicrospira taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
hypothetical protein
PLM4_65_coex_sep16_scaffold_5830_6
Marinobacterium sp. AK27, Marinobacterium, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6353..7321
DNA (969bp) protein (323aa)
hypothetical protein Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI000382E032
Uncharacterized protein {ECO:0000313|EMBL:KEA64124.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacterium.;" source="Marinobacterium sp. AK27.;"
TPR repeat-containing protein
PLM4_65_coex_sep16_scaffold_5830_7
R_Gammaproteobacteria_41_20, Gammaproteobacteria, Proteobacteria, Bacteria

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7337..8260
DNA (924bp) protein (308aa)
hypothetical protein Tax=Uliginosibacterium gangwonense RepID=UPI00035D4741
translation factor
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_41_20_curated
PLM4_65_coex_sep16_scaffold_5830_8
BJP_IG2069_Desfulfarculales_53_13, Desulfarculales, Deltaproteobacteria, Proteobacteria, Bacteria

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8281..8580
DNA (300bp) protein (100aa)
Uncharacterized protein Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T6T3_NIAKG
hypothetical protein
Tax=BJP_IG2069_Desfulfarculales_53_13
PLM4_65_coex_sep16_scaffold_5830_9
Pedobacter sp. Stok-3, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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8605..9120
DNA (516bp) protein (172aa)
N-acetyltransferase GCN5 (EC:2.3.1.-)
GCN5-related N-acetyltransferase Tax=Zobellia galactanivorans (strain DSM 12802 / CIP 106680 / NCIMB 13871 / Dsij) RepID=G0L974_ZOBGA
Putative GNAT family acetyltransferase {ECO:0000313|EMBL:AJP77075.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. Stok-3.;"
PLM4_65_coex_sep16_scaffold_5830_10
unknown

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9274..10062
DNA (789bp) protein (263aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_5830_11
unknown

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10059..10697
DNA (639bp) protein (213aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_5830_12
Nitrincola lacisaponensis, Nitrincola, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10722..12263)
DNA (1542bp) protein (514aa)
Cell division protein FtsH {ECO:0000313|EMBL:KDE40635.1}; EC=3.4.24.- {ECO:0000313|EMBL:KDE40635.1};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Nitrincola.;" source="Nitrincola lacisaponensis.;"
AAA ATPase central domain protein Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C4F5_NITHN
ATPase AAA
PLM4_65_coex_sep16_scaffold_5830_13

Not on your lists

comp(12275..13243)
DNA (969bp) protein (323aa)
Integral membrane sensor signal transduction histidine kinase Tax=mine drainage metagenome RepID=T1BJA1_9ZZZZ
Integral membrane sensor signal transduction histidine kinase {ECO:0000313|EMBL:EQD69847.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
sensor protein basS/pmrB
PLM4_65_coex_sep16_scaffold_5830_14
Magnetospirillum magnetotacticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13477..14154)
DNA (678bp) protein (226aa)
Two component transcriptional regulator, winged helix family protein Tax=gamma proteobacterium BDW918 RepID=I2JKP6_9GAMM
Response regulator in two-component regulatory system with PhoQ {ECO:0000313|EMBL:KIL99411.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magnetotacticum MS-1.;"
two component transcriptional regulator, winged helix family
PLM4_65_coex_sep16_scaffold_5830_15
RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(14162..14869)
DNA (708bp) protein (236aa)
hypothetical protein Tax=Thiobacillus denitrificans RepID=UPI00036DDAC1
virulence factor family protein
Tax=RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated
Displaying 15 items

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