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PLM4_65_coex_sep16_scaffold_4211

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_4211_1
unknown

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comp(2..286)
DNA (285bp) protein (95aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_4211_2
Xanthomonas vesicatoria, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(294..851)
DNA (558bp) protein (186aa)
Putative uncharacterized protein Tax=Xanthomonas vesicatoria ATCC 35937 RepID=F0BEM8_9XANT
Lipopolysaccharide export system protein LptC {ECO:0000256|HAMAP-Rule:MF_01915}; Flags: Precursor;; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas vesicatoria ATCC 35937.;"
hypothetical protein
PLM4_65_coex_sep16_scaffold_4211_3
RBG_13_Deltaproteobacteria_60_28_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(848..1348)
DNA (501bp) protein (167aa)
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase Tax=Methylohalobius crimeensis RepID=UPI0003B325AD
kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
Tax=RBG_13_Deltaproteobacteria_60_28_curated
PLM4_65_coex_sep16_scaffold_4211_4
Nitrococcus mobilis, Nitrococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1345..2355)
DNA (1011bp) protein (337aa)
Arabinose 5-phosphate isomerase {ECO:0000256|PIRNR:PIRNR004692}; Short=API {ECO:0000256|PIRNR:PIRNR004692};; EC=5.3.1.13 {ECO:0000256|PIRNR:PIRNR004692};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Nitrococcus.;" source="Nitrococcus mobilis Nb-231.;"
KpsF/GutQ family protein (EC:5.3.1.13)
Arabinose 5-phosphate isomerase Tax=Nitrococcus mobilis Nb-231 RepID=A4BQL6_9GAMM
PLM4_65_coex_sep16_scaffold_4211_5
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

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2427..2684
DNA (258bp) protein (86aa)
transcriptional regulator transcription regulator protein bin=GWF1_Xanthomonadales_69_6 species=Xanthomonas sacchari genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
BolA family transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
PLM4_65_coex_sep16_scaffold_4211_6
Halorhodospira halochloris, Halorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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2695..3948
DNA (1254bp) protein (418aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC:2.5.1.7)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylpyruvate transferase {ECO:0000256|HAMAP-Rule:MF_00111}; UDP-N-acetylglucosamine enolpyruvyl transferase {ECO:0000256|HAMAP-Rule:MF_00111}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Halorhodospira.;" source="Halorhodospira halochloris str. A.;"
UDP-N-acetylglucosamine 1-carboxyvinyltransferase Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=MURA_THISH
PLM4_65_coex_sep16_scaffold_4211_7
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3960..5075)
DNA (1116bp) protein (372aa)
hypothetical protein Tax=Thioalkalivibrio sp. ALE11 RepID=UPI000364B59C
serine protease
Tax=BJP_IG2102_Gammaproteobacteria_62_140
PLM4_65_coex_sep16_scaffold_4211_8
Legionella drancourtii, Legionella, Legionellales, Gammaproteobacteria, Proteobacteria, Bacteria

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5261..5863
DNA (603bp) protein (201aa)
Ubiquinol-cytochrome c reductase iron-sulfur subunit {ECO:0000256|RuleBase:RU004494}; EC=1.10.2.2 {ECO:0000256|RuleBase:RU004494};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella.;" source="Legionella drancourtii LLAP12.;"
Ubiquinol-cytochrome c reductase iron-sulfur subunit Tax=Legionella drancourtii LLAP12 RepID=G9ESF7_9GAMM
ubiquinol-cytochrome c reductase, iron-sulfur subunit
PLM4_65_coex_sep16_scaffold_4211_9
Methylophaga frappieri, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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5863..7128
DNA (1266bp) protein (422aa)
Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC:1.10.2.2)
Cytochrome b Tax=Methylophaga frappieri (strain ATCC BAA-2434 / DSM 25690 / JAM7) RepID=I1YKA8_METFJ
Cytochrome b {ECO:0000256|RuleBase:RU003385}; Flags: Precursor;; species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Methylophaga.;" source="Methylophaga frappieri (strain ATCC BAA-2434 / DSM 25690 / JAM7).;"
PLM4_65_coex_sep16_scaffold_4211_10
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7121..7942
DNA (822bp) protein (274aa)
Cytochrome c1 Tax=sulfur-oxidizing symbionts RepID=G2FDU5_9GAMM
Cytochrome C {ECO:0000313|EMBL:GAN45229.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
ubiquinol cytochrome C oxidoreductase
PLM4_65_coex_sep16_scaffold_4211_11
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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7984..8613
DNA (630bp) protein (210aa)
Glutathione S-transferase domain-containing protein Tax=Thiothrix nivea DSM 5205 RepID=I3BQM8_9GAMM
Glutathione S-transferase domain-containing protein {ECO:0000313|EMBL:EIJ33671.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
glutathione S-transferase domain-containing protein
PLM4_65_coex_sep16_scaffold_4211_12
unknown

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8749..8907
DNA (159bp) protein (53aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_4211_13
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

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8960..9322
DNA (363bp) protein (121aa)
Stringent starvation protein B Tax=Hahella chejuensis (strain KCTC 2396) RepID=Q2S9X8_HAHCH
Stringent starvation protein B {ECO:0000313|EMBL:CDI01296.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competibacter denitrificans Run_A_D11.;"
sspB; ClpXP protease specificity-enhancing factor
PLM4_65_coex_sep16_scaffold_4211_14
Azotobacter chroococcum, Azotobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9333..9695)
DNA (363bp) protein (121aa)
UPF0102 protein Avin_13130 Tax=Azotobacter vinelandii RepID=C1DQ87_AZOVD
Hypothetical protein
UPF0102 protein Achr_29530 {ECO:0000256|HAMAP-Rule:MF_00048}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Azotobacter.;" source="Azotobacter chroococcum NCIMB 8003.;"
PLM4_65_coex_sep16_scaffold_4211_15
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9711..11606)
DNA (1896bp) protein (632aa)
LppC family lipoprotein Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BVN3_NITHN
LppC family lipoprotein
LppC family lipoprotein {ECO:0000313|EMBL:ADE13661.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
PLM4_65_coex_sep16_scaffold_4211_16
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12142..12960)
DNA (819bp) protein (273aa)
Uncharacterized protein Tax=Bermanella marisrubri RepID=Q1MYB0_9GAMM
Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
Displaying 16 items

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