ggKbase home page

PLM4_65_coex_sep16_scaffold_4671

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_4671_1
unknown

Not on your lists

comp(3..695)
DNA (693bp) protein (231aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_4671_2
Tolypothrix bouteillei, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

946..1812
DNA (867bp) protein (289aa)
methyltransferase Tax=Scytonema hofmanni RepID=UPI00034B4E01
Methyltransferase {ECO:0000313|EMBL:KIE07009.1}; species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix bouteillei VB521301.;"
hypothetical protein
PLM4_65_coex_sep16_scaffold_4671_3
Pararhodospirillum photometricum, Pararhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1813..2247)
DNA (435bp) protein (145aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Pararhodospirillum.;" source="Rhodospirillum photometricum DSM 122.;"
Ribonuclease VapC Tax=Rhodospirillum photometricum DSM 122 RepID=H6SJA1_RHOPH
Putative plasmid stability-like protein
PLM4_65_coex_sep16_scaffold_4671_4
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2642..3835)
DNA (1194bp) protein (398aa)
membrane protein Tax=Oxalobacteraceae bacterium JGI 0001004-K23 RepID=UPI000361D793
Membrane protein {ECO:0000313|EMBL:KGF82591.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
hypothetical protein
PLM4_65_coex_sep16_scaffold_4671_5
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3838..5010)
DNA (1173bp) protein (391aa)
xdhB; xanthine dehydrogenase (EC:1.17.1.4)
aldehyde oxidase Tax=Nevskia ramosa RepID=UPI0003B3809F
Uncharacterized protein {ECO:0000313|EMBL:ETW97436.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
PLM4_65_coex_sep16_scaffold_4671_6
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5153..6316
DNA (1164bp) protein (388aa)
hypothetical protein Tax=Burkholderia pseudomallei RepID=UPI00016B1808
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABA47595.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei (strain 1710b).;"
PLM4_65_coex_sep16_scaffold_4671_7
Azoarcus sp. BH72, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6195..7724)
DNA (1530bp) protein (510aa)
xdhA; xanthine dehydrogenase (EC:1.17.1.4)
Xanthine dehydrogenase {ECO:0000313|EMBL:CAL94828.1}; EC=1.17.1.4 {ECO:0000313|EMBL:CAL94828.1};; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. (strain BH72).;"
FAD-binding molybdopterin dehydrogenase Tax=Leucothrix mucor RepID=UPI0003B693FE
PLM4_65_coex_sep16_scaffold_4671_8
Alteromonas macleodii, Alteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8091..8759)
DNA (669bp) protein (223aa)
Hypoxanthine phosphoribosyltransferase Tax=Alteromonas macleodii RepID=F2G9C8_ALTMD
hypoxanthine phosphoribosyltransferase
Uncharacterized protein {ECO:0000313|EMBL:AGP97196.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Alteromonas.;" source="Alteromonas macleodii str. 'Ionian Sea UM7'.;"
PLM4_65_coex_sep16_scaffold_4671_9
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8801..10120
DNA (1320bp) protein (440aa)
Guanine deaminase Tax=Azoarcus sp. KH32C RepID=H0PZT0_9RHOO
guaD; guanine deaminase
Guanine deaminase {ECO:0000313|EMBL:BAL25568.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
PLM4_65_coex_sep16_scaffold_4671_10
unknown

Not on your lists

10312..10734
DNA (423bp) protein (141aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_4671_11
RBG_16_Gammaproteobacteria_62_13__curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10830..11198)
DNA (369bp) protein (123aa)
hypothetical protein Tax=Thioalkalivibrio RepID=UPI0003783061
diacylglycerol kinase
Tax=RBG_16_Gammaproteobacteria_62_13__curated
PLM4_65_coex_sep16_scaffold_4671_12
Thiocapsa marina, Thiocapsa, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11195..12760)
DNA (1566bp) protein (522aa)
Probable glycine dehydrogenase (decarboxylating) subunit 2 {ECO:0000256|HAMAP-Rule:MF_00713}; EC=1.4.4.2 {ECO:0000256|HAMAP-Rule:MF_00713};; Glycine cleavage system P-protein subunit 2 {ECO:0000256|HAMAP-Rule:MF_00713}; Glycine decarboxylase subunit 2 {ECO:0000256|HAMAP-Rule:MF_00713}; Glycine dehydrogenase (aminomethyl-transferring) subunit 2 {ECO:0000256|HAMAP-Rule:MF_00713}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiocapsa.;" source="Thiocapsa marina 5811.;"
glycine dehydrogenase (EC:1.4.4.2)
Probable glycine dehydrogenase (decarboxylating) subunit 2 Tax=Thiocapsa marina 5811 RepID=F9U9H0_9GAMM
PLM4_65_coex_sep16_scaffold_4671_13

Not on your lists

comp(12714..14048)
DNA (1335bp) protein (445aa)
glycine dehydrogenase subunit 1 (EC:1.4.4.2)
Glycine dehydrogenase subunit 1 Tax=sediment metagenome RepID=D9PNF7_9ZZZZ
Glycine dehydrogenase subunit 1 {ECO:0000313|EMBL:EFK94912.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="sediment metagenome.;"
PLM4_65_coex_sep16_scaffold_4671_14
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14090..14485)
DNA (396bp) protein (132aa)
Glycine cleavage H-protein, subgroup Tax=sediment metagenome RepID=D9PNF6_9ZZZZ
glycine cleavage system protein H
Tax=RBG_16_Gamma2_60_9_curated
PLM4_65_coex_sep16_scaffold_4671_15

Not on your lists

comp(14496..15584)
DNA (1089bp) protein (363aa)
Glycine cleavage system aminomethyltransferase T Tax=sediment metagenome RepID=D9PNF5_9ZZZZ
Glycine cleavage system aminomethyltransferase T {ECO:0000313|EMBL:EFK94910.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="sediment metagenome.;"
glycine cleavage system aminomethyltransferase T
Displaying 15 items

View Taxonomy