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PLM4_65_coex_sep16_scaffold_4988

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_4988_1
unknown

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1..156
DNA (156bp) protein (52aa)
cbsB; cystathionine beta-synthase (EC:4.2.1.22)
PLM4_65_coex_sep16_scaffold_4988_2
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

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comp(347..559)
DNA (213bp) protein (71aa)
cysteine synthase (EC:2.5.1.47)
Cystathionine beta-synthase Tax=Azospirillum amazonense Y2 RepID=G1XYG6_9PROT
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_19_curated
PLM4_65_coex_sep16_scaffold_4988_3
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(586..1758)
DNA (1173bp) protein (391aa)
cystathionine beta-synthase Tax=Dyella japonica RepID=UPI00031202F2
cystathionine beta-synthase
Cystathionine beta-synthase {ECO:0000313|EMBL:AIF49393.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
PLM4_65_coex_sep16_scaffold_4988_4
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1793..2644
DNA (852bp) protein (284aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-(glutamine-N5) MTase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-glutamine N-methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (strain R551-3).;"
Release factor glutamine methyltransferase Tax=Stenotrophomonas maltophilia (strain R551-3) RepID=B4SKP7_STRM5
protein-(glutamine-N5) methyltransferase
PLM4_65_coex_sep16_scaffold_4988_5
Alkalilimnicola ehrlichii, Alkalilimnicola, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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2652..3152
DNA (501bp) protein (167aa)
peptidylprolyl isomerase (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; Flags: Precursor;; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Alkalilimnicola.;" source="Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1).;"
Peptidyl-prolyl cis-trans isomerase Tax=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) RepID=Q0AA61_ALKEH
PLM4_65_coex_sep16_scaffold_4988_6
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3199..3924
DNA (726bp) protein (242aa)
Monofunctional biosynthetic peptidoglycan transglycosylase {ECO:0000256|HAMAP-Rule:MF_00766, ECO:0000256|SAAS:SAAS00055690}; Short=Monofunctional TGase {ECO:0000256|HAMAP-Rule:MF_00766};; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00766, ECO:0000256|SAAS:SAAS00055699};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Monofunctional biosynthetic peptidoglycan transglycosylase Tax=Rhodanobacter sp. 115 RepID=I4W8W6_9GAMM
mtgA; peptidoglycan transglycosylase
PLM4_65_coex_sep16_scaffold_4988_7
Burkholderia sp. YI23, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4021..5109
DNA (1089bp) protein (363aa)
Two component LuxR family transcriptional regulator Tax=Burkholderia sp. YI23 RepID=G8MNX8_9BURK
luxR; two component LuxR family transcriptional regulator
Two component LuxR family transcriptional regulator {ECO:0000313|EMBL:AET94517.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. YI23.;"
PLM4_65_coex_sep16_scaffold_4988_8
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

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5297..6076
DNA (780bp) protein (260aa)
hypothetical protein Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI00037081C8
integral membrane protein
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
PLM4_65_coex_sep16_scaffold_4988_9
unknown

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6073..6240
DNA (168bp) protein (56aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_4988_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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6237..7703
DNA (1467bp) protein (489aa)
Pyridoxal-dependent decarboxylase Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01TW0_SOLUE
pyridoxal-dependent decarboxylase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_65_coex_sep16_scaffold_4988_11
Cyanothece sp. ATCC 51142, Cyanothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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8225..8551
DNA (327bp) protein (109aa)
CHAD domain containing protein Tax=Cyanothece sp. ATCC 51472 RepID=G6H010_9CHRO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB54511.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanothece.;" source="Cyanothece sp. (strain ATCC 51142).;"
PLM4_65_coex_sep16_scaffold_4988_12
RLO_OD1_Magasanikbacteria_43_12, Magasanikbacteria, Parcubacteria, Bacteria

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8652..9353
DNA (702bp) protein (234aa)
hypothetical protein Tax=Thioalkalivibrio versutus RepID=UPI00036B3ACA
family 2 glycosyl transferase
Tax=RIFCSPLOWO2_12_FULL_OD1_Magasanikbacteria_43_12_curated
PLM4_65_coex_sep16_scaffold_4988_13
Asticcacaulis sp. YBE204, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9387..10541)
DNA (1155bp) protein (385aa)
Uncharacterized protein Tax=Asticcacaulis sp. YBE204 RepID=V4NZ30_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:ESQ81141.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis sp. YBE204.;"
glycosyl hydrolase family 88
PLM4_65_coex_sep16_scaffold_4988_14
Asticcacaulis sp. YBE204, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10570..12084)
DNA (1515bp) protein (505aa)
Uncharacterized protein Tax=Asticcacaulis sp. YBE204 RepID=V4P7C7_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:ESQ81140.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis sp. YBE204.;"
glycoside hydrolase family 28
PLM4_65_coex_sep16_scaffold_4988_15
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12240..13160)
DNA (921bp) protein (307aa)
5-methyltetrahydrofolate--homocysteine methyltransferase Tax=Beggiatoa alba B18LD RepID=I3CD57_9GAMM
5-methyltetrahydrofolate--homocysteine methyltransferase {ECO:0000313|EMBL:EIJ41550.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
metH; B12-dependent methionine synthase
PLM4_65_coex_sep16_scaffold_4988_16
Thioalkalivibrio nitratireducens, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13144..15846)
DNA (2703bp) protein (901aa)
metH_[H]; 5-methyltetrahydrofolate--homocysteine methyltransferase (EC:2.1.1.13)
5-methyltetrahydrofolate--homocysteine methyltransferase {ECO:0000313|EMBL:AGA31949.1}; EC=2.1.1.13 {ECO:0000313|EMBL:AGA31949.1};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 /; ALEN2).;"
5-methyltetrahydrofolate--homocysteine methyltransferase Tax=Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 / ALEN2) RepID=L0DQV7_THIND
PLM4_65_coex_sep16_scaffold_4988_17
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15872..16516)
DNA (645bp) protein (215aa)
Methylenetetrahydrofolate reductase {ECO:0000256|RuleBase:RU003862}; EC=1.5.1.20 {ECO:0000256|RuleBase:RU003862};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
metF; 5,10-methylenetetrahydrofolate reductase (EC:1.5.1.20)
Methylenetetrahydrofolate reductase Tax=Caenispirillum salinarum AK4 RepID=K9GSU5_9PROT
Displaying 17 items

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