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PLM3-1_170_b2_sep16_scaffold_27

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_27_1
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(2..649)
DNA (648bp) protein (216aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MLP8_9BACT
membrane protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_27_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(659..1705)
DNA (1047bp) protein (349aa)
D-alanine--D-alanine ligase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEL0_GEMAT bin=16ft_combo_ws3_JS1 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
D-alanine/D-alanine ligase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_27_3
R_Nitrospirae_66_17, Nitrospirae, Bacteria

Not on your lists

comp(1702..2199)
DNA (498bp) protein (166aa)
2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase (EC:4.6.1.12)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Tax=Desulfosporosinus meridiei (strain ATCC BAA-275 / DSM 13257 / NCIMB 13706 / S10) RepID=J7IL87_DESMD
Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
PLM3-1_170_b2_sep16_scaffold_27_4
Kytococcus sedentarius, Kytococcus, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2196..2936)
DNA (741bp) protein (247aa)
Bifunctional enzyme IspD/IspF Tax=Kytococcus sedentarius (strain ATCC 14392 / DSM 20547 / CCM 314 / 541) RepID=C7NK62_KYTSD
2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase/2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Bifunctional enzyme IspD/IspF {ECO:0000256|HAMAP-Rule:MF_01520, ECO:0000256|SAAS:SAAS00096235}; species="Bacteria; Actinobacteria; Micrococcales; Dermacoccaceae; Kytococcus.;" source="Kytococcus sedentarius (strain ATCC 14392 / DSM 20547 / CCM 314 / 541); (Micrococcus sedentarius).;"
PLM3-1_170_b2_sep16_scaffold_27_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(2969..4405)
DNA (1437bp) protein (479aa)
DNA repair protein radA Tax=Desmospora sp. 8437 RepID=F5SI67_9BACL
DNA repair protein RadA
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_27_6
RBG_16_Zixibacteria_43_9_curated, Zixibacteria, Bacteria

Not on your lists

comp(4407..5306)
DNA (900bp) protein (300aa)
Putative uncharacterized protein bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
mce-like protein
Tax=RBG_16_Zixibacteria_43_9_curated
PLM3-1_170_b2_sep16_scaffold_27_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(5317..6006)
DNA (690bp) protein (230aa)
ABC-type transport system, ATP-binding component Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LS07_SYNAS bin=16ft_combo_ws3_JS1 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
ABC transporter-like protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_27_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(6068..6868)
DNA (801bp) protein (267aa)
Putative ABC transport system permease protein Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0AGU6_IGNAJ bin=16ft_combo_ws3_JS1 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_27_9
CG_Omnitr_01, Omnitrophica, Bacteria

Not on your lists

comp(6875..8296)
DNA (1422bp) protein (474aa)
Primary replicative DNA helicase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GBB6_GEOUR
replicative DNA helicase
Tax=CG_Omnitr_01
PLM3-1_170_b2_sep16_scaffold_27_10
Burkholderia caribensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8293..9168)
DNA (876bp) protein (292aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00038014C8
Uracil-DNA glycosylase, family 4 {ECO:0000313|EMBL:ETY80700.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia caribensis MBA4.;"
phage SPO1 DNA polymerase-like protein
PLM3-1_170_b2_sep16_scaffold_27_11
RBG_13_Chloroflexi_53_26_curated, Chloroflexi, Bacteria

Not on your lists

comp(9178..10476)
DNA (1299bp) protein (433aa)
bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase (EC:4.1.1.36 6.3.2.5)
Phosphopantothenate-cysteine ligase Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Q2RK29_MOOTA
Tax=RBG_13_Chloroflexi_53_26_curated
PLM3-1_170_b2_sep16_scaffold_27_12
unknown

Not on your lists

comp(10483..10722)
DNA (240bp) protein (80aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_27_13
Thermotoga maritima, Thermotoga, Thermotogales, Thermotogae, Thermotogae, Bacteria

Not on your lists

comp(10747..11322)
DNA (576bp) protein (192aa)
gmk; guanylate kinase (EC:2.7.4.8)
Guanylate kinase; EC=2.7.4.8;; GMP kinase; species="Bacteria; Thermotogae; Thermotogales; Thermotogaceae; Thermotoga.;" source="Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099).;"
Guanylate kinase Tax=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) RepID=KGUA_THEMA
PLM3-1_170_b2_sep16_scaffold_27_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(11363..12241)
DNA (879bp) protein (293aa)
YicC domain protein Tax=Rhodothermus marinus RepID=D0MK07_RHOM4 bin=16ft_combo_ws3_JS1 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
YicC-like domain-containing protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_27_15
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

12378..14249
DNA (1872bp) protein (624aa)
TPR domain protein bin=GWC2_Methylomirabilis_70_16 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM3-1_170_b2_sep16_scaffold_27_16
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

14246..15685
DNA (1440bp) protein (480aa)
Fibronectin-binding protein Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=Q67PS6_SYMTH bin=16ft_combo_ws3_JS1 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_27_17
unknown

Not on your lists

15821..16138
DNA (318bp) protein (106aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_27_18
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(16245..16565)
DNA (321bp) protein (107aa)
anti-anti-sigma factor; K04749 anti-sigma B factor antagonist bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
rsbV; anti sigma b factor antagonist RsbV
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_27_19
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(16813..19278)
DNA (2466bp) protein (822aa)
Two component, sigma54 specific, transcriptional regulator, Fis family Tax=Burkholderia RepID=A0KE50_BURCH bin=16ft_combo_ws3_JS1 species=unknown genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
NifA subfamily transcriptional regulator
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_27_20
unknown

Not on your lists

comp(19318..19704)
DNA (387bp) protein (129aa)
PLM3-1_170_b2_sep16_scaffold_27_21
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(19815..21734)
DNA (1920bp) protein (640aa)
Selenocysteine-specific translation elongation factor Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CJ04_DESK7 bin=16ft_combo_ws3_JS1 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
selenocysteine-specific translation elongation factor
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_27_22
GWF2_RIF_IGX_33_9_curated, RIF-IGX, Bacteria

Not on your lists

comp(21755..23062)
DNA (1308bp) protein (436aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase bin=GWC2_Ignavibacteria_56_12 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase
Tax=GWF2_RIF_IGX_33_9_curated
PLM3-1_170_b2_sep16_scaffold_27_23
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(23059..24081)
DNA (1023bp) protein (341aa)
Release factor glutamine methyltransferase Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=Q67TD4_SYMTH
protoporphyrinogen oxidase
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_27_24
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(24084..25163)
DNA (1080bp) protein (360aa)
prfA; peptide chain release factor 1 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Thermacetogenium phaeum genus=Thermacetogenium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
prfA; peptide chain release factor 1
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_27_25
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(25176..26054)
DNA (879bp) protein (293aa)
hypothetical protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_27_26
GWC1_Treponema_61_84_curated, Spirochaetes, Bacteria

Not on your lists


comp(26100..26333)
DNA (234bp) protein (78aa)
50S ribosomal protein L31 bin=GWA1_Treponema_62_8 species=unknown genus=unknown taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWA1_Treponema_62_8 organism_group=Spirochaetes
50S ribosomal protein L31
Tax=GWC1_Treponema_61_84_curated
PLM3-1_170_b2_sep16_scaffold_27_27
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(26360..27673)
DNA (1314bp) protein (438aa)
Transcription termination factor Rho Tax=Caldithrix abyssi DSM 13497 RepID=H1XU49_9BACT bin=16ft_combo_ws3_JS1 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
rho; transcription termination factor Rho
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_27_28
unknown

Not on your lists

comp(28029..29666)
DNA (1638bp) protein (546aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_27_29
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(29814..31853)
DNA (2040bp) protein (680aa)
Primosomal protein N' (Replication factor Y)-superfamily II helicase Tax=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) RepID=A5D1C1_PELTS bin=16ft_combo_ws3_JS1 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
PriA; primosomal protein N'
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_27_30
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(31902..32303)
DNA (402bp) protein (134aa)
Two component transcriptional regulator, winged helix family Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9S2V2_THEOJ bin=16ft_combo_ws3_JS1 species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
two component transcriptional regulator, winged helix family
Tax=RBG_16_RIF_WS3X_71_46_curated
Displaying items 1-30 of 46 in total

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