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PLM3-1_170_b2_sep16_scaffold_278

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_278_1
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

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13..711
DNA (699bp) protein (233aa)
ABC transporter related, ATP binding protein bin=GWA2_Ignavibacteria_55_11 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
ABC transporter ATPase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
PLM3-1_170_b2_sep16_scaffold_278_2
RBG_16_RIF05_58_8_curated, RIF5, Bacteria

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708..1856
DNA (1149bp) protein (383aa)
MacB-like periplasmic core domain protein
hypothetical protein; K02004 putative ABC transport system permease protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Desulfovibrio sp. FW1012B genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF05_58_8_curated
PLM3-1_170_b2_sep16_scaffold_278_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

1861..3024
DNA (1164bp) protein (388aa)
ABC transporter membrane protein Tax=candidate division ZIXI bacterium RBG-1 RepID=T0LHW0_9BACT
MacB-like periplasmic core domain protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_278_4
RBG_16_Chloroflexi_51_9_curated, Chloroflexi, Bacteria

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3083..3991
DNA (909bp) protein (303aa)
hemC; porphobilinogen deaminase (EC:2.5.1.61)
Porphobilinogen deaminase Tax=Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM B-1644) RepID=C8W5F1_DESAS
Tax=RBG_16_Chloroflexi_51_9_curated
PLM3-1_170_b2_sep16_scaffold_278_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

3994..5271
DNA (1278bp) protein (426aa)
serS; seryl-tRNA synthetase; K01875 seryl-tRNA synthetase [EC:6.1.1.11] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
SerS; seryl-tRNA synthetase (EC:6.1.1.11)
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_278_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

5280..6410
DNA (1131bp) protein (377aa)
Histidine kinase Tax=Rhodothermus marinus RepID=D0MIM9_RHOM4 bin=16ft_combo_ws3_JS1 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
integral membrane sensor signal transduction histidine kinase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_278_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

6407..7969
DNA (1563bp) protein (521aa)
Response regulator Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0AKW6_IGNAJ bin=16ft_combo_ws3_JS1 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
response regulator receiver protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_278_8
RBG_16_Chloroflexi_57_8_curated, Chloroflexi, Bacteria

Not on your lists

7974..8477
DNA (504bp) protein (168aa)
Uncharacterized protein Tax=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) RepID=B8E1B7_DICTD
hypothetical protein
Tax=RBG_16_Chloroflexi_57_8_curated
PLM3-1_170_b2_sep16_scaffold_278_9
CG_Delta_02, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8455..9156
DNA (702bp) protein (234aa)
hypothetical protein Tax=Spirosoma panaciterrae RepID=UPI00036C13B5
glycoprotein endopeptidase
Tax=CG_Delta_02
PLM3-1_170_b2_sep16_scaffold_278_10
CG_Arma_01, Armatimonadetes, Bacteria

Not on your lists

9153..9626
DNA (474bp) protein (158aa)
ribosomal-protein-alanine acetyltransferase (EC:2.3.1.-)
Ribosomal-protein-alanine acetyltransferase Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4KS28_OSCVS
Tax=CG_Arma_01
PLM3-1_170_b2_sep16_scaffold_278_11
RBG_16_Zixibacteria_40_9_curated, Zixibacteria, Bacteria

Not on your lists

9623..10732
DNA (1110bp) protein (370aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta bin=GWA2_Ignavibacteriae_54_16_partial species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Ignavibacteriae_54_16_partial organism_group=Ignavibacteria
accD; acetyl-CoA carboxylase, carboxyl transferase subunit beta
Tax=RBG_16_Zixibacteria_40_9_curated
PLM3-1_170_b2_sep16_scaffold_278_12
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

10729..12039
DNA (1311bp) protein (437aa)
FolC bifunctional protein Tax=Meiothermus silvanus (strain ATCC 700542 / DSM 9946 / VI-R2) RepID=D7BI18_MEISD
folylpolyglutamate synthase
Tax=RBG_16_Euryarchaeota_68_13_curated
PLM3-1_170_b2_sep16_scaffold_278_13
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

12029..15604
DNA (3576bp) protein (1192aa)
Putative uncharacterized protein Tax=Caldithrix abyssi DSM 13497 RepID=H1XXS0_9BACT bin=16ft_combo_ws3_JS1 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_278_14
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15696..15986
DNA (291bp) protein (97aa)
Histone family protein DNA-binding protein Tax=Syntrophothermus lipocalidus (strain DSM 12680 / TGB-C1) RepID=D7CIP7_SYNLT
histone family protein DNA-binding protein
DNA-binding protein {ECO:0000313|EMBL:KJS23277.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
PLM3-1_170_b2_sep16_scaffold_278_15
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

16384..17472
DNA (1089bp) protein (363aa)
hypothetical protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
cytochrome C
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_278_16
unknown

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17435..18481
DNA (1047bp) protein (349aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_278_17
RLO_WOR_2_51_24, WOR-2, Bacteria

Not on your lists

18581..20287
DNA (1707bp) protein (569aa)
Type II secretion system protein E (GspE) bin=GWB2_CP_45_9 species=Acetohalobium arabaticum genus=Acetohalobium taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
type II secretion system protein E (GspE)
Tax=RIFCSPLOWO2_12_FULL_WOR_2_51_24_curated
PLM3-1_170_b2_sep16_scaffold_278_18
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

20296..21510
DNA (1215bp) protein (405aa)
Type II secretion system F domain protein bin=GWD2_Nitrospirae-related_57_8 species=Desulfovibrio fructosivorans genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
MSHA biogenesis protein MshG
Tax=RBG_16_Nitrospirae_64_22_curated
PLM3-1_170_b2_sep16_scaffold_278_19
R_WOR_1_53_15, WOR-1, Bacteria

Not on your lists

21639..22019
DNA (381bp) protein (127aa)
Putative fimbrial protein Tax=Caldisericum exile (strain DSM 21853 / NBRC 104410 / AZM16c01) RepID=I0GLF6_CALEA
putative fimbrial protein
Tax=RIFCSPHIGHO2_01_FULL_WOR_1_53_15_curated
PLM3-1_170_b2_sep16_scaffold_278_20
GWA2_RIF01_43_8_curated, RIF1, Bacteria

Not on your lists

22129..24162
DNA (2034bp) protein (678aa)
Uncharacterized protein (Fragment) bin=GWA2_Elusimicrobia_69_24 species=Cavia porcellus genus=Cavia taxon_order=Rodentia taxon_class=Mammalia phylum=Chordata tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
hypothetical protein
Tax=GWA2_RIF01_43_8_curated
PLM3-1_170_b2_sep16_scaffold_278_21
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists

24159..24665
DNA (507bp) protein (169aa)
Putative fimbrial protein Tax=Phycisphaera mikurensis (strain NBRC 102666 / KCTC 22515 / FYK2301M01) RepID=I0IEA5_PHYMF
putative fimbrial protein
Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
PLM3-1_170_b2_sep16_scaffold_278_22
unknown

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24662..25048
DNA (387bp) protein (129aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_278_23
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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25048..25563
DNA (516bp) protein (172aa)
Tax=RBG_16_Deltaproteobacteria_42_7_curated
PLM3-1_170_b2_sep16_scaffold_278_24
RLO_PLX_64_10, Bacteria

Not on your lists

25560..27068
DNA (1509bp) protein (503aa)
hypothetical protein Tax=Spirosoma spitsbergense RepID=UPI000366F0E7
NHL repeat-containing protein
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM3-1_170_b2_sep16_scaffold_278_25
RBG_16_Deltaproteobacteria_49_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27077..28861
DNA (1785bp) protein (595aa)
Type IV pilus assembly protein PilM bin=GWC2_OP3_44_8 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
putative conseved hypothetical protein
Tax=RBG_16_Deltaproteobacteria_49_23_curated
PLM3-1_170_b2_sep16_scaffold_278_26
unknown

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28875..29444
DNA (570bp) protein (190aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_278_27
unknown

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29453..29746
DNA (294bp) protein (98aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_278_28
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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29812..30210
DNA (399bp) protein (133aa)
Response regulator Tax=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) RepID=A5D153_PELTS bin=16ft_combo_ws3_JS1 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
two component transcriptional regulator
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_278_29
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

30305..31693
DNA (1389bp) protein (463aa)
Cystathionine beta-synthase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEM2_GEMAT bin=16ft_combo_ws3_JS1 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
cystathionine beta-synthase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_278_30
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31697..32707
DNA (1011bp) protein (337aa)
Cys/Met metabolism pyridoxal-phosphate-dependent protein Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JMS7_CELLD
Cys/Met metabolism pyridoxal-phosphate-dependent protein
Cys/Met metabolism pyridoxal-phosphate-dependent protein {ECO:0000313|EMBL:ADZ85842.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
Displaying items 1-30 of 43 in total

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