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PLM3-1_170_b2_sep16_scaffold_805

Search features with annotation key words

Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_805_1
RBG_16_Caldithrix_48_16_curated, Caldithrix, Bacteria

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1..1518
DNA (1518bp) protein (506aa)
Outer membrane protein bin=GWF2_Ignavibacteria_35_20 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
Outer membrane protein
Tax=RBG_16_Caldithrix_48_16_curated
PLM3-1_170_b2_sep16_scaffold_805_2
RLO_PLX_64_10, Bacteria

Not on your lists

1515..3539
DNA (2025bp) protein (675aa)
DNA ligase (EC:6.5.1.2)
DNA ligase Tax=uncultured Latescibacteria bacterium RepID=Q2Z0D4_9BACT
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM3-1_170_b2_sep16_scaffold_805_3
RLO_PLX_64_10, Bacteria

Not on your lists

3588..5675
DNA (2088bp) protein (696aa)
DNA polymerase III subunit epsilon (EC:2.7.7.7)
Helicase c2 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LRT5_HALO1 bin=16ft_combo_ws3_JS1 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM3-1_170_b2_sep16_scaffold_805_4
[Polyangium] brachysporum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5663..7195
DNA (1533bp) protein (511aa)
Histidine ammonia-lyase {ECO:0000256|HAMAP-Rule:MF_00229, ECO:0000256|RuleBase:RU004479}; Short=Histidase {ECO:0000256|HAMAP-Rule:MF_00229};; EC=4.3.1.3 {ECO:0000256|HAMAP-Rule:MF_00229, ECO:0000256|RuleBase:RU004479};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="[Polyangium] brachysporum.;"
hutH; Histidine ammonia-lyase (Histidase) (EC:4.3.1.3)
Histidine ammonia-lyase Tax=[Polyangium] brachysporum RepID=A8KCI3_9BURK
PLM3-1_170_b2_sep16_scaffold_805_5
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

7234..8952
DNA (1719bp) protein (573aa)
Urocanate hydratase Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=HUTU_HERA2
urocanate hydratase
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM3-1_170_b2_sep16_scaffold_805_6
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

Not on your lists

8993..10270
DNA (1278bp) protein (426aa)
imidazolonepropionase; K01468 imidazolonepropionase [EC:3.5.2.7] bin=bin9_gal15 species=Desulfurispora thermophila genus=Desulfurispora taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin9_gal15 organism_group=GAL15
imidazolonepropionase
Tax=CSP1_3_Armatimonadetes
PLM3-1_170_b2_sep16_scaffold_805_7
RBG_16_Zixibacteria_53_22_curated, Zixibacteria, Bacteria

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10359..11903
DNA (1545bp) protein (515aa)
putative formiminotransferase-cyclodeaminase (EC:2.1.2.5 4.3.1.4)
Putative formiminotransferase-cyclodeaminase Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8N3Z1_ANATU bin=16ft_combo_ws3_JS1 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_Zixibacteria_53_22_curated
PLM3-1_170_b2_sep16_scaffold_805_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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11881..13665
DNA (1785bp) protein (595aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4F0_GEMAT bin=16ft_combo_ws3_JS1 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_805_9
RLO_PLX_64_10, Bacteria

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13662..14513
DNA (852bp) protein (284aa)
PHP domain protein Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MKA2_RHOM4
PHP domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM3-1_170_b2_sep16_scaffold_805_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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14602..15150
DNA (549bp) protein (183aa)
id=5224983 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_805_11
unknown

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15128..17263
DNA (2136bp) protein (712aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_805_12
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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17273..17770
DNA (498bp) protein (166aa)
Competence protein ComEA helix-hairpin-helix repeat protein Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SKB8_THEM7
competence protein ComEA
Tax=GWC2_Gemmatimonadetes_71_10_curated
PLM3-1_170_b2_sep16_scaffold_805_13
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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17990..19687
DNA (1698bp) protein (566aa)
type II secretion system protein E; K02652 type IV pilus assembly protein PilB bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
type II secretion system protein E
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_805_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

19707..20789
DNA (1083bp) protein (361aa)
pilT; twitching mobility protein; K02669 twitching motility protein PilT bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
pilT; twitching mobility protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_805_15
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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20817..22040
DNA (1224bp) protein (408aa)
type II secretion system protein; K02653 type IV pilus assembly protein PilC bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Type II secretion system F domain-containing protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_805_16
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

22048..23775
DNA (1728bp) protein (576aa)
signal transduction histidine kinase NtrB; K02668 two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
PAS domain S-box protein (EC:2.7.13.3)
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_805_17
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

23801..25183
DNA (1383bp) protein (461aa)
two component, sigma54 specific, Fis family transcriptional regulator; K02481 two-component system, NtrC family, response regulator bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
sigma-54 factor interaction domain-containing protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_805_18
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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25447..25857
DNA (411bp) protein (137aa)
prokaryotic N-terminal methylation motif domain protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
N-terminal methylation motif domain-containing protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_805_19
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

25886..26296
DNA (411bp) protein (137aa)
prokaryotic N-terminal methylation motif domain protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
N-terminal methylation motif domain-containing protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_805_20
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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26505..27518
DNA (1014bp) protein (338aa)
ABC-type transport system, ATPase component Tax=Candidatus Nitrospira defluvii RepID=D8PIN4_9BACT bin=16ft_combo_ws3_JS1 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:AKF11015.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandaracinus amylolyticus.;"
ABC transporter-like protein
PLM3-1_170_b2_sep16_scaffold_805_21
R_NC10_66_22, NC10, Bacteria

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27515..28282
DNA (768bp) protein (256aa)
hypothetical protein bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=bin3_NC10 organism_group=NC10
efflux ABC transporter permease PilI
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_805_22
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

28398..28922
DNA (525bp) protein (175aa)
hypothetical protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_805_23
GWC2_Deltaproteobacteria_55_46b_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28919..29695
DNA (777bp) protein (259aa)
peptidase A24A domain-containing protein; K02654 leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] bin=GWC2_NOV_55_46 species=Geobacter daltonii genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_NOV_55_46 organism_group=Proteobacteria
pilD; type IV prepilin-like proteins leader peptide processing enzyme
Tax=GWC2_Deltaproteobacteria_55_46b_curated
PLM3-1_170_b2_sep16_scaffold_805_24
CG_Syntroph_01, Syntrophus, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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29892..30404
DNA (513bp) protein (171aa)
Tax=CG_Syntroph_01
PLM3-1_170_b2_sep16_scaffold_805_25
RBG_13_Deltaproteobacteria_43_22_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30401..30814
DNA (414bp) protein (138aa)
Uncharacterized protein Tax=Desulfococcus multivorans DSM 2059 RepID=S7TX81_DESML
Tax=RBG_13_Deltaproteobacteria_43_22_curated
PLM3-1_170_b2_sep16_scaffold_805_26
Pseudomonas sp. RIT357, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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30852..33071
DNA (2220bp) protein (740aa)
Efflux transporter, RND family, MFP subunit Tax=Frankia sp. EUN1f RepID=D3D8G0_9ACTO
Putative lipoprotein {ECO:0000313|EMBL:EZP66051.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. RIT357.;"
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_805_27
RIFOXYD12_FULL_Ignavibacteria_36_8_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

33092..34402
DNA (1311bp) protein (437aa)
Hypothetical membrane protein bin=GWF2_Ignavibacteria_35_20 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
Tax=RIFOXYD12_FULL_Ignavibacteria_36_8_curated
PLM3-1_170_b2_sep16_scaffold_805_28
R_Proteobacteria_53_8, Proteobacteria, Bacteria

Not on your lists

34435..35751
DNA (1317bp) protein (439aa)
Uncharacterized protein Tax=Nitrospina gracilis 3/211 RepID=M1YKL9_9BACT
Tax=RIFCSPLOWO2_02_FULL_Proteobacteria_53_8_curated
PLM3-1_170_b2_sep16_scaffold_805_29
CG_CP01_01, CG_CP01, Bacteria

Not on your lists

comp(35787..37880)
DNA (2094bp) protein (698aa)
hypothetical protein, partial Tax=Saccharomonospora saliphila RepID=UPI0003600877
hypothetical protein
Tax=CG_CP01_01
PLM3-1_170_b2_sep16_scaffold_805_30
RBG_13_Chloroflexi_56_8_curated, Chloroflexi, Bacteria

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comp(37946..39499)
DNA (1554bp) protein (518aa)
hypothetical protein bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
hypothetical protein
Tax=RBG_13_Chloroflexi_56_8_curated
Displaying items 1-30 of 50 in total

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